PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_020109-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family HSF
Protein Properties Length: 207aa    MW: 23446.2 Da    PI: 9.936
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_020109-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind83.33.5e-262583260
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
   HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60
                   Fl+k+y++++d+++++++sws ++nsfvv+++ efa+++LpkyFkh+nf+SFvRQLn+Y
  NNU_020109-RA 25 FLSKTYDMVDDPSTNSIVSWSPSNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTY 83
                   9********************999**********************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.7E-291783IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.8E-3421119IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.3E-252383IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.4E-162548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.0E-232591IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-166375IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-167688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MDGVQSTTTI SSSSSISNAN APPPFLSKTY DMVDDPSTNS IVSWSPSNNS FVVWNPPEFA  60
RDLLPKYFKH NNFSSFVRQL NTYIERGPGW GWSSNNKLKR VYKKNGSQFK GLIEMVERRG  120
SETQALDGAV THLLVAYEKN GAFVIDKKKE QVGGEIKEDH SRGGQKEERH GTRKEMGRKK  180
MIKGVFTVQF GEDLRPNRNV YIYDENS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-2023832787Heat shock factor protein 1
5d5v_B2e-2023832787Heat shock factor protein 1
5d5v_D2e-2023832787Heat shock factor protein 1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17750.17e-37heat shock factor 1