PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_020205-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

G2-like

Protein Properties

Length: 407aa MW: 45263.2 Da PI: 7.8647

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_020205-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	34.6	4.1e-11	93	116	2	25
G2-like 2 prlrWtpeLHerFveaveqLGGse 25 prlrWtp+LH +Fv+ave+LGG+e NNU_020205-RA 93 PRLRWTPDLHLSFVHAVEKLGGQE 116 8*********************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-9	89	116	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
MVGETIDMIE RVEIHEGEST SPLSSQKCSS FDLNEEATSE EDDSTAEVAT VTSELGNGTV 60 ATAAGDDSTD KNSTTEDGER TTTVRQYVRS KMPRLRWTPD LHLSFVHAVE KLGGQEILSE 120 MFYQRNSPYR HFKMDNRSIL LARKAHDSNP LQCLFKDSFS QRSYSFKANP SSCPSDRHED 180 WAFNRQSSMR PVSLSSKDQG QGLSQPSVSY LSSTRGVFTG NGLIRHSQFH EEKRWPPRGM 240 ININQRIKDR TIPANVGWVG TSSQPPPGQI HSGPICFDVA HTLHPPGWIA SSTATNKQYR 300 SCSIPDPLVI SGSFQTELGG TPFRLEWLWQ KQIEVSNLSY GADWSCTKQA MKAVNPPSGS 360 HFPIGMKNHN WSGPAVRSPS AGYSCPFPSQ RRTRSPNNQS YTKELAS

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

MVGETIDMIE RVEIHEGEST SPLSSQKCSS FDLNEEATSE EDDSTAEVAT VTSELGNGTV  60
ATAAGDDSTD KNSTTEDGER TTTVRQYVRS KMPRLRWTPD LHLSFVHAVE KLGGQEILSE  120
MFYQRNSPYR HFKMDNRSIL LARKAHDSNP LQCLFKDSFS QRSYSFKANP SSCPSDRHED  180
WAFNRQSSMR PVSLSSKDQG QGLSQPSVSY LSSTRGVFTG NGLIRHSQFH EEKRWPPRGM  240
ININQRIKDR TIPANVGWVG TSSQPPPGQI HSGPICFDVA HTLHPPGWIA SSTATNKQYR  300
SCSIPDPLVI SGSFQTELGG TPFRLEWLWQ KQIEVSNLSY GADWSCTKQA MKAVNPPSGS  360
HFPIGMKNHN WSGPAVRSPS AGYSCPFPSQ RRTRSPNNQS YTKELAS

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM464316	3e-31	AM464316.2 Vitis vinifera contig VV78X206152.13, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010276999.1	0.0	PREDICTED: uncharacterized protein LOC104611575
Refseq	XP_010277000.1	0.0	PREDICTED: uncharacterized protein LOC104611575
TrEMBL	A0A1U8B7J0	0.0	A0A1U8B7J0_NELNU; uncharacterized protein LOC104611575
STRING	XP_010276999.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	5e-16	G2-like family protein