PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_020223-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

MYB_related

Protein Properties

Length: 201aa MW: 21936.1 Da PI: 9.0623

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_020223-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38	3.9e-12	2	45	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+eE++ ++ + + lG+g+W+ I+r + + Rt+ q+ s+ qk NNU_020223-RA 2 PWTKEEHKTFLAGLESLGKGDWRGISRNFVLSRTPTQVASHGQK 45 7****************************************877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.481	1	51	IPR017930	Myb domain
Pfam	PF00249	7.7E-9	2	45	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.3E-10	2	42	IPR009057	Homeodomain-like
CDD	cd00167	4.45E-8	2	42	No hit	No description
SuperFamily	SSF46689	1.12E-12	2	50	IPR009057	Homeodomain-like
SMART	SM00717	1.3E-4	2	49	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	2.8E-13	2	50	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
IPWTKEEHKT FLAGLESLGK GDWRGISRNF VLSRTPTQVA SHGQKNFLRQ FTSNRKKRRS 60 NLFDDPSHTA PGLPLKPIIQ FHEQAGTSAQ IAKQVAVRGL EGPTVVPMSA TWITPDFVGM 120 PHMGGISSGK LTNPATTTDL PTASFIPAMN HPILDYGYLP KACTTLASTA ISLESTFNLC 180 PQPIMQCESQ AASSRNFCCE H

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010258762.1	1e-123	PREDICTED: transcription factor MYB1R1-like isoform X2
TrEMBL	A0A1U8A1X8	1e-122	A0A1U8A1X8_NELNU; transcription factor MYB1R1-like isoform X2
STRING	XP_010258761.1	1e-120	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56840.1	2e-28	MYB_related family protein