PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_020226-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

Dof

Protein Properties

Length: 156aa MW: 17417.6 Da PI: 9.6066

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_020226-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	127	5.8e-40	42	101	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +ek+++cprC+s++tkfCy+nny+++qPr+fCkaC+ryWt+GG+lrnvP+G+grrknk s NNU_020226-RA 42 PEKTIACPRCKSMETKFCYFNNYNVNQPRHFCKACQRYWTAGGTLRNVPIGAGRRKNKPS 101 7899*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-28	40	99	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.0E-32	44	99	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.127	46	100	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	48	84	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
MADVESSGDA PGFKLFGTTI PLRVRKAEVE ESKADDTSEK KPEKTIACPR CKSMETKFCY 60 FNNYNVNQPR HFCKACQRYW TAGGTLRNVP IGAGRRKNKP SDHGTIGFSD NCVLDASAVN 120 QFDLESVMEQ WTMATTKGGF RHVLPSSKRR RNTSSS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Acts as a negative regulator in the phytochrome-mediated light responses. Controls phyB-mediated end-of-day response and the phyA-mediated anthocyanin accumulation. Not involved in direct flowering time regulation. {ECO:0000269\|PubMed:19619493}.
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Transcriptional repressor of 'CONSTANS' expression (By similarity). Regulates a photoperiodic flowering response. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By red or far-red light. Circadian-regulation. The transcript level rises progressively from dawn and decreases during the night. {ECO:0000269\|PubMed:19619493}.
UniProt	INDUCTION: Circadian-regulation. The transcript level rises progressively from dawn and decreases during the night. {ECO:0000269\|PubMed:19619493}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010277029.1	1e-116	PREDICTED: dof zinc finger protein DOF1.5
Swissprot	O22967	4e-49	CDF4_ARATH; Cyclic dof factor 4
Swissprot	P68350	5e-49	DOF15_ARATH; Dof zinc finger protein DOF1.5
TrEMBL	A0A1U8BJR0	1e-114	A0A1U8BJR0_NELNU; dof zinc finger protein DOF1.5
STRING	XP_010277029.1	1e-115	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34140.1	2e-51	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Bueso E, et al. Arabidopsis COGWHEEL1 links light perception and gibberellins with seed tolerance to deterioration. Plant J., 2016. 87(6): p. 583-96 [PMID:27227784]