PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_020282-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family M-type_MADS
Protein Properties Length: 220aa    MW: 24680.4 Da    PI: 10.1909
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_020282-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF72.24.4e-231663249
                   ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
         SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                   ri  +  rqvtfskRrng++KKA+EL++LC+aeva+++fs+ gk + +
  NNU_020282-RA 16 RIVREDYRQVTFSKRRNGLFKKASELCILCGAEVAIVVFSPAGKAFSF 63
                   6667778************************************97766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554552.88E-29782IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.988767IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-33766IPR002100Transcription factor, MADS-box
CDDcd002655.15E-36879No hitNo description
PRINTSPR004041.8E-21929IPR002100Transcription factor, MADS-box
PfamPF003198.4E-251763IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-212944IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-214465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009559Biological Processembryo sac central cell differentiation
GO:0009960Biological Processendosperm development
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MVKKTSMGRQ KIEIKRIVRE DYRQVTFSKR RNGLFKKASE LCILCGAEVA IVVFSPAGKA  60
FSFGHSCVES VIDRFLTLEP VQPDDGTPAL VDARHSAHVR ELNRQYTQVL NQLEAQKKRG  120
EALQKSKKVN QGQVWWEAPI DDLNLHELEQ LRVSMEELKK NVSKRVNELS VEASSQATAT  180
FLAVNSVRMV NPFIAKTIGS SSIAHPSYAF GAFGFQRGLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-16798193MEF2 CHIMERA
6byy_B2e-16798193MEF2 CHIMERA
6byy_C2e-16798193MEF2 CHIMERA
6byy_D2e-16798193MEF2 CHIMERA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010277267.11e-164PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A1U8B8671e-162A0A1U8B867_NELNU; agamous-like MADS-box protein AGL61
STRINGXP_010277267.11e-163(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.15e-50AGAMOUS-like 61