PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_020321-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family GRAS
Protein Properties Length: 488aa    MW: 54286.5 Da    PI: 6.4553
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_020321-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS459.12.6e-140464631374
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                    l++ Ll+c ++v++g+le a+ +L+++s+laspdgd+mqR+aayfteALa r+++ +++l kal++++ s  + se + a+klf+e++P+lk++ +
  NNU_020321-RA  46 LIHFLLSCTNHVAAGNLEHANIALEQISHLASPDGDTMQRIAAYFTEALADRILKAWPGLHKALNSTRIS--SISEGILARKLFFELCPFLKLAIV 139
                    6899************************************************************999987..59********************** PP

           GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                    t+NqaI e++ege++vHiiD+   +++QW+aL+q+L++Rpegpp+lRiTg+++    +ke le+t+ rL++ Ae+l++pf+fn+ ++++le+l++e
  NNU_020321-RA 140 TTNQAIIESMEGEKMVHIIDLHCVEPAQWIALIQSLSARPEGPPHLRITGIHE----HKEVLEQTALRLTEEAEKLDLPFQFNP-IVSKLENLDVE 230
                    *****************************************************....9**************************.7999******* PP

           GRAS 193 eLrvkpgEalaVnlvlqlhrll.................................................desvsles..erdevLklvkslsPk 237
                    +Lrvk+gEala+++ lqlh ll                                                 ++++sl+   + + +L ++++lsPk
  NNU_020321-RA 231 SLRVKTGEALAISSLLQLHCLLpsealapasksisiahplqrvlqmrqntigelldkdlvngyspntdsasSSPLSLPAsaKMEGFLAALWGLSPK 326
                    *********************************************************************9944444444446788*********** PP

           GRAS 238 vvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplseka 333
                    ++vv+eqe++hn++++++r+le+l++y++lfd+le++++r+s er+kvE++l+g+ei+n++acegaer+erhe+le+W +rl++aGF+ v++s++ 
  NNU_020321-RA 327 LMVVAEQESNHNGSTLMDRLLESLYFYASLFDCLESTVSRASVERMKVEKMLFGEEIKNIIACEGAERKERHEKLERWIKRLHSAGFRRVSFSYYG 422
                    ************************************************************************************************ PP

           GRAS 334 akqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    + qa++ll+ ++ dgy+++ee+g+lv++W+dr+L+svSaW+
  NNU_020321-RA 423 QLQARRLLQSYGCDGYKIKEENGCLVICWQDRALFSVSAWK 463
                    ****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.43920443IPR005202Transcription factor GRAS
PfamPF035149.0E-13846463IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MVQDEGSSSV TSSPLQFFSL MSLPPNLGSP YPWLKELKSE ERGLCLIHFL LSCTNHVAAG  60
NLEHANIALE QISHLASPDG DTMQRIAAYF TEALADRILK AWPGLHKALN STRISSISEG  120
ILARKLFFEL CPFLKLAIVT TNQAIIESME GEKMVHIIDL HCVEPAQWIA LIQSLSARPE  180
GPPHLRITGI HEHKEVLEQT ALRLTEEAEK LDLPFQFNPI VSKLENLDVE SLRVKTGEAL  240
AISSLLQLHC LLPSEALAPA SKSISIAHPL QRVLQMRQNT IGELLDKDLV NGYSPNTDSA  300
SSSPLSLPAS AKMEGFLAAL WGLSPKLMVV AEQESNHNGS TLMDRLLESL YFYASLFDCL  360
ESTVSRASVE RMKVEKMLFG EEIKNIIACE GAERKERHEK LERWIKRLHS AGFRRVSFSY  420
YGQLQARRLL QSYGCDGYKI KEENGCLVIC WQDRALFSVS AWKCRSVLLG GNSGPNQLQV  480
VDSLTQPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A9e-60304662381Protein SCARECROW
5b3h_D9e-60304662381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010277619.10.0PREDICTED: scarecrow-like protein 3
RefseqXP_010277621.10.0PREDICTED: scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A1U8BCN30.0A0A1U8BCN3_NELNU; scarecrow-like protein 3
STRINGXP_010277619.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]