PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_020404-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

LBD

Protein Properties

Length: 256aa MW: 26574.2 Da PI: 8.0796

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_020404-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127.6	5.9e-40	31	131	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +C aCk+lrrkC+ +C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +l+ael+ NNU_020404-RA 31 PCGACKFLRRKCVIGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELS 126 7*********************9989****************************************************************** PP DUF260 96 llkee 100 +l+++ NNU_020404-RA 127 YLQAH 131 99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.744	30	132	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.4E-39	31	129	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MSSSSTISSG GGGVVGGVGS SSGGGGGGGG PCGACKFLRR KCVIGCIFAP YFDSEQGAAH 60 FAAVHKVFGA SNVSKLLLHI PVHKRLDAVV TICYEAQARL RDPVYGCVAH IFALQQQVVN 120 LQAELSYLQA HLAALELPSP PPPTLLAPPP LSITDLPSAS SIPATATFNL STILDPVVPP 180 HWLLQQREME LRQFGGSGRS PTENSPPTAG GGGDLQALAR ELLQRHRSSV EQSASAQQTC 240 TSTATTTTIT PQLRLT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-38	27	132	7	111	LOB family transfactor Ramosa2.1
5ly0_B	5e-38	27	132	7	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269\|PubMed:19088331}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010277398.1	0.0	PREDICTED: LOB domain-containing protein 30-like
Swissprot	O81323	3e-72	LBD30_ARATH; LOB domain-containing protein 30
TrEMBL	A0A1U8B8I0	0.0	A0A1U8B8I0_NELNU; LOB domain-containing protein 30-like
STRING	XP_010277398.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00220.1	5e-70	LBD family protein

Publications ? help Back to Top
Rast-Somssich MI, et al. The Arabidopsis JAGGED LATERAL ORGANS (JLO) gene sensitizes plants to auxin. J. Exp. Bot., 2017. 68(11): p. 2741-2755 [PMID:28472464] Liu C,Yu H,Li L SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana. PLoS Genet., 2019. 15(1): p. e1007928 [PMID:30657769]