PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_020458-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family LBD
Protein Properties Length: 234aa    MW: 25239.7 Da    PI: 8.407
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_020458-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260102.83.1e-322103197
         DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                    +C++C+vlr++C+++C+l+p++     p++q +++ +v+k+FG++ ++++++a+pe++r+++++sl+yeA+ r+ +Pv+Gavg++++++++++q++
  NNU_020458-RA   2 SCNGCRVLRKGCSESCILRPCLqwiesPEAQGHATVFVAKFFGRAGLMSFITAVPENQRPALFQSLLYEACGRTVNPVNGAVGLLWTGNWHVCQTA 97 
                    6*********************************************************************************************** PP

         DUF260  92 aelall 97 
                    +e++l+
  NNU_020458-RA  98 VETVLR 103
                    998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.7971107IPR004883Lateral organ boundaries, LOB
PfamPF031952.5E-272101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSESCILR PCLQWIESPE AQGHATVFVA KFFGRAGLMS FITAVPENQR  60
PALFQSLLYE ACGRTVNPVN GAVGLLWTGN WHVCQTAVET VLRGGTLRPM TDVVAGILSH  120
DSDETSEVEV ACTNTKKQQR QDLYSRSRTS SKRRGFDEVA GLNLQPGNLD LSLMPGFPKR  180
VAAGGRGVGG MVEKRRPGSP SMNSEESVTT SFDSGAAAGD QMRSGEPKLL NLFL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010277076.11e-174PREDICTED: LOB domain-containing protein 38-like
SwissprotQ9SN232e-81LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A1U8BJT91e-172A0A1U8BJT9_NELNU; LOB domain-containing protein 38-like
STRINGXP_010277076.11e-173(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.12e-83LOB domain-containing protein 39