PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_020529-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 234aa    MW: 26011.5 Da    PI: 8.5918
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_020529-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.31.6e-144794254
                   HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                   +++h+e+ErrRR+riN  +++Lr+llP+      +K +Ka+ L ++v+++k+L
  NNU_020529-RA 47 CKSHSEAERRRRERINGHLATLRTLLPNT-----TKTDKATLLAEVVRHVKEL 94
                   789*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.2344594IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-124794IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.45E-54897No hitNo description
SuperFamilySSF474593.53E-1449104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.1E-144996IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-1251100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5167111.144138215IPR002912ACT domain
Gene3DG3DSA:3.30.70.2601.7E-9139205No hitNo description
SuperFamilySSF550211.96E-8140208No hitNo description
CDDcd048733.74E-11140206No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MPFPSYYEWE DNSSNRNCFL WSLEMMNDGR PTSGSRITAE AKAVAACKSH SEAERRRRER  60
INGHLATLRT LLPNTTKTDK ATLLAEVVRH VKELKKLAAN LAAQDGEGCN GSSREWAFPG  120
ETDELTLGYC DEESKTIKAS LCCDDRPDLL SDLTKVLKSA GGRVVKAEMA TLGGRTKGVF  180
VIERRNGGGS GDNEDLEMLR RALKSVFDKP VLPAWGEILP GNKRPRLFRP THYQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15358ERRRRE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010277478.11e-174PREDICTED: transcription factor bHLH30-like
SwissprotQ9S7Y17e-37BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A1U8BCD31e-172A0A1U8BCD3_NELNU; transcription factor bHLH30-like
STRINGXP_010277476.11e-173(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-35bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]