PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_020533-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family MIKC_MADS
Protein Properties Length: 233aa    MW: 26688.9 Da    PI: 9.6676
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_020533-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.77.2e-291059251
                   ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                   +i+n + rqvtfskRr g++KKAeELS+LCdaeva+iifsstgkl+eyss
  NNU_020533-RA 10 KIDNATARQVTFSKRRRGLFKKAEELSILCDAEVALIIFSSTGKLFEYSS 59
                   69**********************************************96 PP
2K-box52.81.7e-18841711299
          K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     + +  + ++a+L ke+ +  +++R++ Ge+L+ L+++eLqqLe+ Le++l+++ ++K e ++++i++lq+k  el een++L+++++
  NNU_020533-RA  84 LELQLENSNYARLSKEVAEKSHQLRQMRGENLQGLNIEELQQLEKSLETGLSRVLETKGERIMKEISTLQRKGVELLEENERLKQQMA 171
                    566777889****************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.628161IPR002100Transcription factor, MADS-box
CDDcd002657.20E-41277No hitNo description
SuperFamilySSF554551.7E-31382IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003197.7E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.88186176IPR002487Transcription factor, K-box
PfamPF014865.7E-1690170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MAREKIQIRK IDNATARQVT FSKRRRGLFK KAEELSILCD AEVALIIFSS TGKLFEYSSS  60
SMKEILERHN LHSKNLHKLD QPSLELQLEN SNYARLSKEV AEKSHQLRQM RGENLQGLNI  120
EELQQLEKSL ETGLSRVLET KGERIMKEIS TLQRKGVELL EENERLKQQM ASHPTPSPMC  180
AAPLVRLKIM TALIPHLSWV YPIQAEGVDE IKPKCTNHFK GIVHRDIKGE AIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-21169169MEF2C
5f28_B2e-21169169MEF2C
5f28_C2e-21169169MEF2C
5f28_D2e-21169169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010277487.11e-115PREDICTED: MADS-box protein SVP-like isoform X1
RefseqXP_010277488.11e-115PREDICTED: MADS-box protein SVP-like isoform X1
SwissprotQ9FUY66e-96JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A1U8B8Q91e-114A0A1U8B8Q9_NELNU; MADS-box protein SVP-like isoform X1
STRINGXP_010277487.11e-114(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.14e-98MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]