PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_020565-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family AP2
Protein Properties Length: 537aa    MW: 58754.9 Da    PI: 6.4279
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_020565-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.35.7e-11222278155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  NNU_020565-RA 222 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDREEKAARAYDLAALKYWG 278
                    57*******************4444.2455535555.779999**************98 PP
2AP2538.6e-17321372155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s y+GV++++++grW A+I  +     +k  +lg+fgt+eeAa+a++ a+ k++g
  NNU_020565-RA 321 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFGTEEEAAEAYDIAAIKFRG 372
                    57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-8222278IPR001471AP2/ERF domain
SuperFamilySSF541715.62E-15222288IPR016177DNA-binding domain
CDDcd000185.31E-19222288No hitNo description
Gene3DG3DSA:3.30.730.102.2E-12223287IPR001471AP2/ERF domain
PROSITE profilePS5103217.609223286IPR001471AP2/ERF domain
SMARTSM003806.9E-22223292IPR001471AP2/ERF domain
PRINTSPR003672.4E-6224235IPR001471AP2/ERF domain
PfamPF008474.8E-11321372IPR001471AP2/ERF domain
CDDcd000181.92E-24321382No hitNo description
SuperFamilySSF541718.5E-18321382IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.1E-18322381IPR001471AP2/ERF domain
PROSITE profilePS5103219.085322380IPR001471AP2/ERF domain
SMARTSM003808.3E-31322386IPR001471AP2/ERF domain
PRINTSPR003672.4E-6362382IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010080Biological Processregulation of floral meristem growth
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0035265Biological Processorgan growth
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MAPAGNWLSS SVSPLEMLPS CQSSMSDSFH QHFFFDSFYG NDWASLKTQM PYTEEEEAKE  60
VKDVKAHNAA DTSMLASLNP QIQHTVPKLE DFLGGHSSSL ARYSDSQTET QESSLTNVYE  120
QGCSSLFADQ HHHLTSMTAT AGFQPAFSAN SGSEVDDSVS VDETQLRDLA GHSLESGSEM  180
VFSHAPPQSL SLAVAQSSEK AVVPVQLESS KKVTDTFGQR TSIYRGVTRH RWTGRYEAHL  240
WDNSCRREGQ TRKGRQGGYD REEKAARAYD LAALKYWGPT ATINFPVSDY TKELEEMKNM  300
SRQEFIASLR RKSSGFSRGA SIYRGVTRHH QQGRWQARIG RVAGNKDLYL GTFGTEEEAA  360
EAYDIAAIKF RGVNAVTNFE MSRYDIEAIT NSALPIGAAA KRLKLSFETS ADQSLDRNLH  420
DRQPQSSSSS SSISSMSIVP AAQCAIPVDA PAGLYHQNLH HLHSGTGGSL DSSTSTSPLA  480
LLPPPPPPPC GRKFLYGLSA PIDINGHFNV TDNPPQLQAQ AQAVVSQQPW NVASSSY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00504DAPTransfer from AT5G10510Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019055718.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 isoform X2
SwissprotQ52QU21e-157AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A1U8QAA70.0A0A1U8QAA7_NELNU; AP2-like ethylene-responsive transcription factor AIL6 isoform X2
STRINGXP_010277520.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.21e-144AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]