PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_020598-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C3H
Protein Properties Length: 232aa    MW: 25775.1 Da    PI: 6.5089
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_020598-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.66.6e-06198220427
                    ---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                    + C++f + G+Ck+G +C++ Hg+
  NNU_020598-RA 198 KACHYFNK-GFCKHGTNCRYFHGQ 220
                    67******.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.004194221IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5197219IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-4198220IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MDFSESTRVV FNKLQKLEPD NVSKIFGYLL LQDHGDREMI RLAFGLDNLI QALINKAKAE  60
LGLSSKPVYS APVSPSSMNA APVTDLPLQF TPFSPASLRP FSSLATFRVP APYWDPQVTT  120
DQQAISGMDF IPPAYSDSIS DEFRLHNQAQ FLSLEEQLDP NSVGLDFSSN YYYPEPGLGG  180
LSARTSRRSP SLLEFPVKAC HYFNKGFCKH GTNCRYFHGQ AIGVGAHRAF EI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010252700.11e-142PREDICTED: zinc finger CCCH domain-containing protein 18
RefseqXP_010252701.11e-142PREDICTED: zinc finger CCCH domain-containing protein 18
RefseqXP_019052748.11e-142PREDICTED: zinc finger CCCH domain-containing protein 18
TrEMBLA0A1U8Q1Q71e-141A0A1U8Q1Q7_NELNU; zinc finger CCCH domain-containing protein 18
STRINGXP_010252700.11e-142(Nelumbo nucifera)