PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_020606-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

Dof

Protein Properties

Length: 346aa MW: 37332.3 Da PI: 8.3905

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_020606-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.2	1e-39	30	90	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+ lkcprCds+ntkfCyynnysl+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk+ + NNU_020606-RA 30 PEQPLKCPRCDSSNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKRGK 90 68899****************************************************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-28	23	88	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.7E-33	32	88	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.627	34	88	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	36	72	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MMSSDNIPAK QATDDESQNG GRKTASLRPP EQPLKCPRCD SSNTKFCYYN NYSLTQPRHF 60 CKTCRRYWTK GGALRNVPIG GGCRKNKRGK SSSRLSGDPK DSGAPSSDIG GLKFFHGLSP 120 STEFQLCGGL PFSRLHSSTA GSVFNNQFLS YGDHMPSTIA ATATATNSSC FDIDGAAATS 180 GPLMGFNYHI PSLGRQGESG SFKLSGGIQE MGSMNVHSSL ASSIESLSYI NQDLHWRLQQ 240 QRLAMLFGGE NQKDSDVVSS PPATLLENQV QKPQPISFQN LGISKSEVSG VTTPTKNDVS 300 GTGITATEWF FDNSYTPTTT ANSNNNTGNW NGIHAWTDLH QYSALP

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MMSSDNIPAK QATDDESQNG GRKTASLRPP EQPLKCPRCD SSNTKFCYYN NYSLTQPRHF  60
CKTCRRYWTK GGALRNVPIG GGCRKNKRGK SSSRLSGDPK DSGAPSSDIG GLKFFHGLSP  120
STEFQLCGGL PFSRLHSSTA GSVFNNQFLS YGDHMPSTIA ATATATNSSC FDIDGAAATS  180
GPLMGFNYHI PSLGRQGESG SFKLSGGIQE MGSMNVHSSL ASSIESLSYI NQDLHWRLQQ  240
QRLAMLFGGE NQKDSDVVSS PPATLLENQV QKPQPISFQN LGISKSEVSG VTTPTKNDVS  300
GTGITATEWF FDNSYTPTTT ANSNNNTGNW NGIHAWTDLH QYSALP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010277571.1	0.0	PREDICTED: dof zinc finger protein DOF5.7-like
TrEMBL	A0A1U8BKY9	0.0	A0A1U8BKY9_NELNU; dof zinc finger protein DOF5.7-like
STRING	XP_010277571.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65590.1	9e-53	Dof family protein