PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_020713-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family WRKY
Protein Properties Length: 84aa    MW: 8991.06 Da    PI: 7.1616
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_020713-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY36.97.4e-1240683159
                   T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY 31 gCpvkkkversaedpkvveitYegeHnhe 59
                   gCp++k+ver+ +dp+++++tYegeH+h+
  NNU_020713-RA 40 GCPARKHVERAVDDPTMLIVTYEGEHRHS 68
                   8***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007742.1E-52669IPR003657WRKY domain
PfamPF031063.1E-93967IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.2E-114070IPR003657WRKY domain
SuperFamilySSF1182903.01E-94070IPR003657WRKY domain
PROSITE profilePS5081113.9764070IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    Send to blast
MRHAPISHPT STPGENTAKN RSKVPPTHGN ILNPLALEGG CPARKHVERA VDDPTMLIVT  60
YEGEHRHSQP PPPDSVTGGL IESS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010265415.14e-22PREDICTED: probable WRKY transcription factor 17
TrEMBLA0A1U8AHW68e-21A0A1U8AHW6_NELNU; probable WRKY transcription factor 17
STRINGXP_010265415.11e-21(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.19e-16WRKY DNA-binding protein 11