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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | NNU_020716-RA | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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| Family | bHLH | ||||||||
| Protein Properties | Length: 263aa MW: 28393.1 Da PI: 8.8967 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 41.8 | 1.9e-13 | 74 | 120 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
++h+e+ErrRR+riN +++Lr+l+P + K++Ka+ L +++ ++k+L
NNU_020716-RA 74 KSHSEAERRRRERINAHLSTLRKLVPCS-----DKMDKASLLAEVISHVKEL 120
58*************************8.....7****************99 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50888 | 16.634 | 71 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 3.8E-11 | 74 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 1.3E-14 | 75 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF47459 | 2.36E-14 | 75 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 6.4E-13 | 77 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 2.57E-5 | 84 | 122 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 263 aa Download sequence Send to blast |
MGSFSWNSNV VYGSEYSRYF DGFSPNVGFR MMGRGGSSSS SSLVLDSEKG ELVKAPARLG 60 PKAMSEAKAI AALKSHSEAE RRRRERINAH LSTLRKLVPC SDKMDKASLL AEVISHVKEL 120 KRNATEATKG SVIPMDNDEL IVEPHGDGSE GGSVLITASL CCDYRPELLA DIRQALDSLH 180 LKTVRAEIST LGSRVKNVFV MTSYEEGGVG KGNGEVCHLV SSIKQALNSV LEKASSPEFS 240 PGITLSNKRR RVSPFDHSSS SSS |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 79 | 84 | ERRRRE |
| 2 | 247 | 251 | KRRRV |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010277769.1 | 0.0 | PREDICTED: transcription factor bHLH30-like | ||||
| TrEMBL | A0A1U8B9C4 | 0.0 | A0A1U8B9C4_NELNU; transcription factor bHLH30-like | ||||
| STRING | XP_010277769.1 | 0.0 | (Nelumbo nucifera) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G68810.1 | 3e-39 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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