PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_020846-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

LBD

Protein Properties

Length: 170aa MW: 19090.9 Da PI: 8.687

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_020846-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	124.5	5.2e-39	44	143	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +CaaCk lrr+C++dC+lapyfp+++p++fa+vhk+FGasn++k+l++lp ++r a++++ +eA r+rdPvyG+vg+i++l+q + ++ ela+ NNU_020846-RA 44 RCAACKSLRRRCPQDCTLAPYFPSTNPQRFACVHKIFGASNITKMLQQLPVHQRAVAADCISFEASSRVRDPVYGCVGIITQLHQLILVAQRELAE 139 6*********************************************************************************************99 PP DUF260 97 lkee 100 ++ + NNU_020846-RA 140 IQGQ 143 8865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.746	43	144	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-37	44	141	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MITEAKLPSY ENREEQAPMI TEQGRSQKIF LEILQNPTMS NSTRCAACKS LRRRCPQDCT 60 LAPYFPSTNP QRFACVHKIF GASNITKMLQ QLPVHQRAVA ADCISFEASS RVRDPVYGCV 120 GIITQLHQLI LVAQRELAEI QGQVALYGAQ QGQEQKRMAQ SQVHQYNGPI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-34	38	147	5	114	LOB family transfactor Ramosa2.1
5ly0_B	8e-34	38	147	5	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010278070.1	5e-94	PREDICTED: LOB domain-containing protein 24-like
Swissprot	P59468	2e-42	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	A0A1U8B9X8	1e-92	A0A1U8B9X8_NELNU; LOB domain-containing protein 24-like
STRING	XP_010278070.1	2e-93	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	1e-44	LOB domain-containing protein 24