PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_020897-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

ZF-HD

Protein Properties

Length: 223aa MW: 25167.4 Da PI: 8.6975

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_020897-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	85.1	7.5e-27	37	91	5	60
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 +Y+e lkNhA+s+ gh++DGCg+fm++ eegt ++lkCa C CHRnFHR+e+e e NNU_020897-RA 37 KYREWLKNHAVSIRGHVIDGCGDFMAA-REEGTLDTLKCATCKCHRNFHRKETEGE 91 8***********************9.8889******************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	7.0E-19	37	89	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	2.6E-24	37	87	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	3.3E-24	37	88	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	21.936	38	87	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MRMLVLASYE SLGNLSRDKV AGTGGDGASF GKNTINKYRE WLKNHAVSIR GHVIDGCGDF 60 MAAREEGTLD TLKCATCKCH RNFHRKETEG EVYHHQFSPY YRTPMGYLHV ALYHRPLALP 120 LTSGGGGGAQ SREDQEDVSN PVDPLEPSKF KHKRVPKGYT IPLDKPQTLK HSIRRGGEIK 180 QSINTRTTLL CSELVYQDHD PRPMNRFRSN EEVVVILNEN NMD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010272957.1	8e-71	PREDICTED: zinc-finger homeodomain protein 1-like
TrEMBL	A0A1U8B1B9	2e-69	A0A1U8B1B9_NELNU; zinc-finger homeodomain protein 1-like
STRING	XP_010272957.1	3e-70	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	2e-26	homeobox protein 22