PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_020935-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 175aa    MW: 19498.3 Da    PI: 10.4393
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_020935-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.42.7e-212980156
            AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                   ++++GVr ++ +gr++AeIrd ++    ++r +lg+f+taeeAa+a+++a+++l+g+
  NNU_020935-RA 29 THFRGVRKRP-WGRFAAEIRDpWK----KTRKWLGTFDTAEEAARAYDEAARNLRGP 80
                   589*******.**********883....5*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.03E-282986No hitNo description
PfamPF008475.4E-142979IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.9E-313086IPR001471AP2/ERF domain
PROSITE profilePS5103222.2733087IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-213087IPR016177DNA-binding domain
SMARTSM003801.9E-333093IPR001471AP2/ERF domain
PRINTSPR003672.1E-103142IPR001471AP2/ERF domain
PRINTSPR003672.1E-105369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MAVDTLHLRK EGIAGVQKEP VAVVPVKETH FRGVRKRPWG RFAAEIRDPW KKTRKWLGTF  60
DTAEEAARAY DEAARNLRGP KAKTNFGCGG VATSAASSTT FQKHLQQWRS AYVASGERNV  120
FHQAGGPAGM PSVSEFPGYK FEAVEVLMRS EQEKKAIKEE KKPLSFDLNL PPPLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-192686162ATERF1
3gcc_A2e-192686162ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00542DAPTransfer from AT5G44210Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010278126.11e-127PREDICTED: ethylene-responsive transcription factor 9-like
SwissprotQ9FE672e-33ERF80_ARATH; Ethylene-responsive transcription factor 9
TrEMBLA0A1U8BA861e-126A0A1U8BA86_NELNU; ethylene-responsive transcription factor 9-like
STRINGXP_010278126.11e-127(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.11e-24erf domain protein 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]
  3. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]