PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_020992-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family HSF
Protein Properties Length: 607aa    MW: 67106.7 Da    PI: 5.4081
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_020992-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind78.11.4e-24108168262
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTE CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgF 62 
                    Fl+k+y+++ed++l+++isw+ +g+sf v+d+ efa+ vLp+ Fkh+nf+SFvRQLn+Y +
  NNU_020992-RA 108 FLSKTYDLVEDPSLDKVISWEPSGESFEVWDPVEFARAVLPQNFKHNNFSSFVRQLNTYKY 168
                    9**********************************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.4E-45104275IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.2E-23106190IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.4E-33106185IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.8E-14108131IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.7E-26108275IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-14146158IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-14159171IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.4E-33243275IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MSVGFKASFT QACSFGESSA LAGSSSSASA SPLAEHEGFC SMDPSVSVKM ESIGSSSGDK  60
TPFLSSPRLI TESEAAGGGF TSVRGSEEES LPVPRPLECL QGNLIPPFLS KTYDLVEDPS  120
LDKVISWEPS GESFEVWDPV EFARAVLPQN FKHNNFSSFV RQLNTYKYFG LVCGNSLLNL  180
WEKGFRWSFS GFPEYSKWTS NVFGLKREHS IVFQGMSSVV LMVSCIRNSL PTCSALLRFN  240
VLSQGFRKVD TDRWEFANED FLRGKRHLLK NIHRRKSNQT HQIGSYSGLT TETEKLGLEK  300
EVERLRREKN FLMQEVIKLQ QEQHGTADQV ETMNQRLQAA EQRQKQMVTF LAKVLQNPTL  360
LTHLQKKAEH RGIASPRVKR KFIKQHHLDQ RKLDPSMEGQ IVKYNTVEDN LNTSSVMEKL  420
DPVSGTQLPG YILQDMVGKL GLGAASIHIE TENVASSEMQ QELVGASSQM EVGTLDLGTL  480
GSEVALLKGK NVMSLQEEGS ADYFVSFPEG LAKDKTLPDF MSPGTESISK QDDIWSMGFD  540
ASANVSSLCP DMWDNAINYD AQDLGIMGGI SDPWDLSSLQ AAGGGTDNSQ NRDIGCLILH  600
NLALPSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-181051722693Heat shock factor protein 1
5d5v_B4e-181051722693Heat shock factor protein 1
5d5v_D4e-181051722693Heat shock factor protein 1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010278228.10.0PREDICTED: heat stress transcription factor A-3
TrEMBLA0A1U8BE460.0A0A1U8BE46_NELNU; heat stress transcription factor A-3
STRINGXP_010278227.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.13e-41heat shock transcription factor A3