PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_020998-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 303aa    MW: 33369.4 Da    PI: 6.2542
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_020998-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.6e-05277299223
                    EETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                    +C+ C+k+F++   L++H +  H
  NNU_020998-RA 277 SCKSCNKTFKSEIALQSHTKAkH 299
                    6*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF030661.5E-744207No hitNo description
SuperFamilySSF576674.64E-5271298No hitNo description
PROSITE profilePS5015710.824276303IPR007087Zinc finger, C2H2
PfamPF128742.1E-4277298No hitNo description
PROSITE patternPS000280278299IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009294Biological ProcessDNA mediated transformation
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010162Biological Processseed dormancy process
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
SYLLNIHFAS ERPHSPKPFQ NPPLLFLLFS LSFRSFYSRK AMEFWGVEVK GGEPLKVQPG  60
DDKILHLSQV ALGEIKNDKG NAPVLLSVKI EGQKIVLGTL SAEKCTHMSL DLVFEKEFEL  120
SHNWKNGSHF VSLTVAFCLL FTELMDDFTN SESDFDEETP LTTTQNGKPE RKDEQAKEML  180
DAGDESDEDD DEEEGSDEED EETPKKKAEL VKKRGAESAS KTPTPGKKAK LVTPQKTDGK  240
KSGGHTATPF PKQGGKTPAN SAGKKQQQTP TSDGQVSCKS CNKTFKSEIA LQSHTKAKHA  300
AAK
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ8LJS21e-59HDT1_SOYBN; Histone deacetylase HDT1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.18e-28histone deacetylase 2C