PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_021027-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family HD-ZIP
Protein Properties Length: 237aa    MW: 27533.7 Da    PI: 6.3064
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_021027-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.82.2e-1974127356
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    +++++t++q+e Le+ F+++ ++  e++ +LA++lgL+ rqV vWFqNrRa++k
  NNU_021027-RA  74 RKRRLTSDQIESLERSFQEEIKLEPERKMRLARELGLQPRQVAVWFQNRRARWK 127
                    45589************************************************9 PP
2HD-ZIP_I/II123.11.3e-3973164192
    HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                    e+krrl+++q+++LE+sF+ee kLeperK++lareLglqprqvavWFqnrRAR+k+kqlE+ y+aLk+++d +++e+++L++ev +Lr++l+
  NNU_021027-RA  73 ERKRRLTSDQIESLERSFQEEIKLEPERKMRLARELGLQPRQVAVWFQNRRARWKAKQLERVYDALKQEFDVISREKQKLQEEVMKLRAKLE 164
                    69**************************************************************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.15E-1958131IPR009057Homeodomain-like
PROSITE profilePS5007117.97769129IPR001356Homeobox domain
SMARTSM003893.6E-1772133IPR001356Homeobox domain
PfamPF000466.5E-1774127IPR001356Homeobox domain
CDDcd000866.71E-1574130No hitNo description
Gene3DG3DSA:1.10.10.603.1E-2076136IPR009057Homeodomain-like
PRINTSPR000319.8E-6100109IPR000047Helix-turn-helix motif
PROSITE patternPS000270104127IPR017970Homeobox, conserved site
PRINTSPR000319.8E-6109125IPR000047Helix-turn-helix motif
PfamPF021832.1E-8129163IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010434Biological Processbract formation
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MAWNSNVRPL SSRAGDHQTF TFLYDYDSDH PFPGMEMKCR PEAETAVERW APVMTNKSSN  60
GNNHDNNDIN NQERKRRLTS DQIESLERSF QEEIKLEPER KMRLARELGL QPRQVAVWFQ  120
NRRARWKAKQ LERVYDALKQ EFDVISREKQ KLQEEVMKLR AKLEDRATAK EGSTVYTEAS  180
AEETVESTSF ASRSCTKLLN GSTSYAQIAE CNNSFIFNVD DYNPALQPYW AVMSGYP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17277ERKRRL
2121129RRARWKAKQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00486DAPTransfer from AT5G03790Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010278274.11e-179PREDICTED: homeobox-leucine zipper protein ATHB-22-like
SwissprotQ9LZR06e-45ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A1U8BE841e-178A0A1U8BE84_NELNU; homeobox-leucine zipper protein ATHB-22-like
STRINGXP_010278274.11e-179(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.17e-45homeobox 51
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]