PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_021070-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

MYB_related

Protein Properties

Length: 477aa MW: 53039.5 Da PI: 10.3208

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_021070-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28	5e-09	4	41	2	40
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 +rW+t+E++ll av ++G+ +W+++a++++ R l++c NNU_021070-RA 4 MRWSTWEELLLGGAVLRHGTQDWEAVAAELQ-ARILYSC 41 69***************************.****9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00249	1.1E-6	4	41	IPR001005	SANT/Myb domain
CDD	cd00167	0.00461	5	55	No hit	No description
SMART	SM00297	2.6E-10	78	367	IPR001487	Bromodomain
SuperFamily	SSF47370	8.11E-16	270	364	IPR001487	Bromodomain
Gene3D	G3DSA:1.20.920.10	4.3E-13	272	364	IPR001487	Bromodomain
Pfam	PF00439	5.6E-10	273	351	IPR001487	Bromodomain
PROSITE profile	PS50014	9.159	278	348	IPR001487	Bromodomain
CDD	cd04369	4.62E-14	280	362	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence Send to blast
MAMMRWSTWE ELLLGGAVLR HGTQDWEAVA AELQARILYS CSFTAEICKA KYKDLQERYC 60 GCTSWFEELR KQRVAELKRE LENSLESKLE SLKAEREGRN TDSSSCRTES PATLGTSDGV 120 DFSGKETSSK DGLSAGSFTE ETTINWSSQC KGPAPVSAQQ ADIKPESVED SDRDKKSNFV 180 DKLEVTTVVA GRGGNLRKRR GKRKRKECSS NISRDVKEGS VAESDVMSSA NVIVAVPDKE 240 ESTRDCNGSA RPTDENDRND RNGGVGVADL IGIFNSVVEN DCASMFRRRL DSQRRSRYKQ 300 TVRQHLDFDT IRTRIIDHSI MSSKELFRDL LLLANNAAVF YPKNTRQHKS ALALRELAKK 360 TFQRQFLSDS GRETGSSATA NTDAALHVVE APRFNPPVKP RSIRPCNRKV IRKVNDLGKS 420 VPQNPSREGK KSSEAASQVE ASAVAKKSVG RPGKVGRRGS RKRPESQAKG RKKARRT

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence Send to blast

MAMMRWSTWE ELLLGGAVLR HGTQDWEAVA AELQARILYS CSFTAEICKA KYKDLQERYC  60
GCTSWFEELR KQRVAELKRE LENSLESKLE SLKAEREGRN TDSSSCRTES PATLGTSDGV  120
DFSGKETSSK DGLSAGSFTE ETTINWSSQC KGPAPVSAQQ ADIKPESVED SDRDKKSNFV  180
DKLEVTTVVA GRGGNLRKRR GKRKRKECSS NISRDVKEGS VAESDVMSSA NVIVAVPDKE  240
ESTRDCNGSA RPTDENDRND RNGGVGVADL IGIFNSVVEN DCASMFRRRL DSQRRSRYKQ  300
TVRQHLDFDT IRTRIIDHSI MSSKELFRDL LLLANNAAVF YPKNTRQHKS ALALRELAKK  360
TFQRQFLSDS GRETGSSATA NTDAALHVVE APRFNPPVKP RSIRPCNRKV IRKVNDLGKS  420
VPQNPSREGK KSSEAASQVE ASAVAKKSVG RPGKVGRRGS RKRPESQAKG RKKARRT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	198	206	RRGKRKRKE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010278331.1	0.0	PREDICTED: uncharacterized protein LOC104612578 isoform X1
TrEMBL	A0A1U8BLY7	0.0	A0A1U8BLY7_NELNU; uncharacterized protein LOC104612578 isoform X1
STRING	XP_010278331.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42150.1	2e-16	DNA-binding bromodomain-containing protein