PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_021097-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

Protein Properties

Length: 964aa MW: 104949 Da PI: 8.1682

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_021097-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.8	4.6e-19	413	513	1	99
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k l+ sd+++ grlvlpkk+ae++ ++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e++l NNU_021097-RA 413 FEKMLSASDAGRIGRLVLPKKCAEAYfpAISQPEGLPLKVQDAKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID-PEGKL 506 89************************666667778***********99899999999.*******************987.77778 PP EEEEE-S CS B3 93 vvkvfrk 99 v++++++ NNU_021097-RA 507 VMGFRKA 513 8777765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	6.4E-30	410	514	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.07E-19	410	512	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.72E-22	411	512	No hit	No description
PROSITE profile	PS50863	11.406	413	514	IPR003340	B3 DNA binding domain
SMART	SM01019	1.5E-21	413	514	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.1E-16	413	512	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 964 aa Download sequence Send to blast
MTTATTTTTT TTSLGFLFFV LICFCGSESG DRRTSMSSSS APAPAAASSK ICFNQDCKDA 60 KSERLRKGWR LRNGEYAELC DRCASAFEEG RYCETFHSEA AGWRGCESCG KRVHCGCIVS 120 FHSFLLLDAG GVECIACARK NMIPASTIWP SSFFLPLPLP ERLKDLSIKN WSHTSGPSAV 180 AAQWRQPPNL WNTATSQPEL HPRLPYEVDR LGAVSAMDKK KSDDPSERLA SSSLKLPTSD 240 RLANGNAGID TLAGLTTFHR EEGNLDGSHH SYRHKGENDP ADTRKGDTSM NNDIHPSSFV 300 NISLSSSIPK DEPSTPHFGF GAPYVSTSDT NAATKTSGTQ SQRQTPPPPL TKQICASPNN 360 GGDSSTESQL RNGRPRGDAR GRNQLLPRYW PRITDQELQQ ISGDKNAVIT PLFEKMLSAS 420 DAGRIGRLVL PKKCAEAYFP AISQPEGLPL KVQDAKGKEW VFQFRFWPNN NSRMYVLEGV 480 TPCIQSMQLQ AGDTVTFSRI DPEGKLVMGF RKASSVPADQ DNQTHKSGSG ISANGEVKSA 540 DPASTWSKVD KSGYIAKDVP GAKASIPSKR KSSTLGSKSK RLRIENEDLI ELKLTWEEAQ 600 GLLRPPPNHA PSIVVIEGHE FEEYEEAPVL GRPTIFATTN QGECQCYISS MLVIRSNGLS 660 VKTVLSGVNY PLMHFFHPDG PVPKTHGIQK AQELSMEQLE EIISSGKSTA SKRTKAAKQD 720 KDAVEASDGL DTLANLAIMG EGDALPPSAQ PTTKHPRHRP GCTCIVCIQP PSGKGPKHKQ 780 TCTCNVCLTV KRRFRTLMLR REKRQSEKEA ETARKKQQQI HLPKKTTQED DPPVSSNARN 840 SSPNQKQSEN GVSEEDSNRK KPSCSPLKGQ IDLNIQPERE DEPPSVSESA SMLRMIQDAT 900 DMYLRKQRLS SSATRDLNEG GGDGAGAGGD KTDGISHGSN HLEVDADHPI TLSMSMSAPT 960 SATG

Sequence ? help Back to Top

Protein Sequence Length: 964 aa Download sequence Send to blast

MTTATTTTTT TTSLGFLFFV LICFCGSESG DRRTSMSSSS APAPAAASSK ICFNQDCKDA  60
KSERLRKGWR LRNGEYAELC DRCASAFEEG RYCETFHSEA AGWRGCESCG KRVHCGCIVS  120
FHSFLLLDAG GVECIACARK NMIPASTIWP SSFFLPLPLP ERLKDLSIKN WSHTSGPSAV  180
AAQWRQPPNL WNTATSQPEL HPRLPYEVDR LGAVSAMDKK KSDDPSERLA SSSLKLPTSD  240
RLANGNAGID TLAGLTTFHR EEGNLDGSHH SYRHKGENDP ADTRKGDTSM NNDIHPSSFV  300
NISLSSSIPK DEPSTPHFGF GAPYVSTSDT NAATKTSGTQ SQRQTPPPPL TKQICASPNN  360
GGDSSTESQL RNGRPRGDAR GRNQLLPRYW PRITDQELQQ ISGDKNAVIT PLFEKMLSAS  420
DAGRIGRLVL PKKCAEAYFP AISQPEGLPL KVQDAKGKEW VFQFRFWPNN NSRMYVLEGV  480
TPCIQSMQLQ AGDTVTFSRI DPEGKLVMGF RKASSVPADQ DNQTHKSGSG ISANGEVKSA  540
DPASTWSKVD KSGYIAKDVP GAKASIPSKR KSSTLGSKSK RLRIENEDLI ELKLTWEEAQ  600
GLLRPPPNHA PSIVVIEGHE FEEYEEAPVL GRPTIFATTN QGECQCYISS MLVIRSNGLS  660
VKTVLSGVNY PLMHFFHPDG PVPKTHGIQK AQELSMEQLE EIISSGKSTA SKRTKAAKQD  720
KDAVEASDGL DTLANLAIMG EGDALPPSAQ PTTKHPRHRP GCTCIVCIQP PSGKGPKHKQ  780
TCTCNVCLTV KRRFRTLMLR REKRQSEKEA ETARKKQQQI HLPKKTTQED DPPVSSNARN  840
SSPNQKQSEN GVSEEDSNRK KPSCSPLKGQ IDLNIQPERE DEPPSVSESA SMLRMIQDAT  900
DMYLRKQRLS SSATRDLNEG GGDGAGAGGD KTDGISHGSN HLEVDADHPI TLSMSMSAPT  960
SATG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5yzy_C	4e-65	391	515	1	125	B3 domain-containing transcription repressor VAL1
5yzz_C	4e-65	391	515	1	125	B3 domain-containing transcription repressor VAL1
5z00_C	4e-65	391	515	1	125	B3 domain-containing transcription repressor VAL1
5z00_G	4e-65	391	515	1	125	B3 domain-containing transcription repressor VAL1
5z00_K	4e-65	391	515	1	125	B3 domain-containing transcription repressor VAL1
5z00_M	4e-65	391	515	1	125	B3 domain-containing transcription repressor VAL1
6j9a_A	5e-65	391	515	2	126	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	790	803	KRRFRTLMLRREKR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019055852.1	0.0	PREDICTED: B3 domain-containing protein Os07g0563300-like
Swissprot	Q0D5G4	0.0	Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBL	A0A1U8QBC2	0.0	A0A1U8QBC2_NELNU; B3 domain-containing protein Os07g0563300-like
STRING	XP_010278377.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	1e-136	HSI2-like 1