PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_021109-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

C3H

Protein Properties

Length: 415aa MW: 45958.3 Da PI: 9.4886

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_021109-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.6	7.8e-12	4	27	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k e+Cr+f+r G C+yG+rCkF H+ NNU_021109-RA 4 KKEPCRNFQR-GSCQYGERCKFLHV 27 89******.***********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	16.915	2	29	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.15E-5	2	29	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.3E-6	3	28	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.7E-8	4	26	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.5E-9	4	27	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005635	Cellular Component	nuclear envelope
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence Send to blast
MYRKKEPCRN FQRGSCQYGE RCKFLHVTQQ QPKPNPFGFG TGSQYNTNQS QQKPNPFGFG 60 VQSSSQSKGA FDFSAKNQNQ FKPFENKWVR SSTLPLSSSR QADNQAQVPP HKCTDPESCK 120 QQIVEDFEHE RPLWNLTCYG HCKYHPCDIV GDISYEELRA AAYDGAKNKM SLESIVQRER 180 SLLNSKLIEF ENLLRNPYVK PNSVPSGPSP FPGTNSNVSP VAVPNNMPPS MSSFSQLGTS 240 LNLGSGTGAS MSLDNPFIQA SSFQNSGQTS SGLGVNISTF RNEGTTGSLW SQQPVQPLGS 300 ASKFNISNSN NNFTGTISSQ FSTSSAVSAQ LPSSTNWDSN KTAINKNASI WQEEWNPGEV 360 ENRLHLNFLG ILTSYKLLSV GVVHPICRFQ KKHLQMNFYR MVTVRMKPAS CTGRG

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence Send to blast

MYRKKEPCRN FQRGSCQYGE RCKFLHVTQQ QPKPNPFGFG TGSQYNTNQS QQKPNPFGFG  60
VQSSSQSKGA FDFSAKNQNQ FKPFENKWVR SSTLPLSSSR QADNQAQVPP HKCTDPESCK  120
QQIVEDFEHE RPLWNLTCYG HCKYHPCDIV GDISYEELRA AAYDGAKNKM SLESIVQRER  180
SLLNSKLIEF ENLLRNPYVK PNSVPSGPSP FPGTNSNVSP VAVPNNMPPS MSSFSQLGTS  240
LNLGSGTGAS MSLDNPFIQA SSFQNSGQTS SGLGVNISTF RNEGTTGSLW SQQPVQPLGS  300
ASKFNISNSN NNFTGTISSQ FSTSSAVSAQ LPSSTNWDSN KTAINKNASI WQEEWNPGEV  360
ENRLHLNFLG ILTSYKLLSV GVVHPICRFQ KKHLQMNFYR MVTVRMKPAS CTGRG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010278413.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X1
TrEMBL	A0A1U8BAQ8	0.0	A0A1U8BAQ8_NELNU; zinc finger CCCH domain-containing protein 16 isoform X1
STRING	XP_010278413.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75340.1	2e-66	C3H family protein