PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_021120-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

G2-like

Protein Properties

Length: 457aa MW: 50684.9 Da PI: 5.7222

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_021120-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.1	8.5e-33	230	284	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHerFveav++L G+ekAtPk +l+lm+v++Lt++hvkSHLQkYRl NNU_021120-RA 230 KPRMRWTPELHERFVEAVNKLDGAEKATPKGVLKLMNVESLTIYHVKSHLQKYRL 284 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.833	227	287	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.6E-31	228	285	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.87E-18	229	284	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.4E-25	230	285	IPR006447	Myb domain, plants
Pfam	PF00249	5.5E-9	232	283	IPR001005	SANT/Myb domain
Pfam	PF14379	7.1E-23	320	367	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence Send to blast
MDANCASACP PLFIRSESLN SPSRPPAPMF QLQKISPDPE PSSPVSYESY PQYPTSVFSR 60 SSTFCTDLYI SSSTSSETHR HLGNLPFLPQ PQTFDQPIAT VQSSKSPLLL SGDSSNQTEE 120 KRSEDLMKDF LNFPGDASDG SFHGANFASD SLTFTEQLDL QILSAELDIA MTDNSENPRL 180 DEIYEAPTPD SRLKCKPFHQ PIHPIQPVVP PVAGQIHSSP STPGAAAAHK PRMRWTPELH 240 ERFVEAVNKL DGAEKATPKG VLKLMNVESL TIYHVKSHLQ KYRLAKYMPE TKEDKKASSS 300 EDKKVASTSK ESDARLRRGI HITEALRLQM EVQKQLHEQL EVQRDLQLRI EEHARYLQKI 360 LEEQQKAGST LIPACELPSL SKDPEGQPVP PSACALSQQA ESKTESPSLP AKHKATDCAE 420 HEQLACQKRL CRETSPEIAE AKPEVTSDEH VVENPVP

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence Send to blast

MDANCASACP PLFIRSESLN SPSRPPAPMF QLQKISPDPE PSSPVSYESY PQYPTSVFSR  60
SSTFCTDLYI SSSTSSETHR HLGNLPFLPQ PQTFDQPIAT VQSSKSPLLL SGDSSNQTEE  120
KRSEDLMKDF LNFPGDASDG SFHGANFASD SLTFTEQLDL QILSAELDIA MTDNSENPRL  180
DEIYEAPTPD SRLKCKPFHQ PIHPIQPVVP PVAGQIHSSP STPGAAAAHK PRMRWTPELH  240
ERFVEAVNKL DGAEKATPKG VLKLMNVESL TIYHVKSHLQ KYRLAKYMPE TKEDKKASSS  300
EDKKVASTSK ESDARLRRGI HITEALRLQM EVQKQLHEQL EVQRDLQLRI EEHARYLQKI  360
LEEQQKAGST LIPACELPSL SKDPEGQPVP PSACALSQQA ESKTESPSLP AKHKATDCAE  420
HEQLACQKRL CRETSPEIAE AKPEVTSDEH VVENPVP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-26	230	287	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-26	230	287	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-26	230	287	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-26	230	287	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-26	230	287	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-26	230	287	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-26	230	287	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-26	230	287	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00354	DAP	Transfer from AT3G13040	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010278435.1	0.0	PREDICTED: myb family transcription factor PHL6 isoform X1
Refseq	XP_010278436.1	0.0	PREDICTED: myb family transcription factor PHL6 isoform X1
Refseq	XP_010278437.1	0.0	PREDICTED: myb family transcription factor PHL6 isoform X1
Refseq	XP_019055862.1	0.0	PREDICTED: myb family transcription factor PHL6 isoform X1
Swissprot	Q949U2	1e-117	PHL6_ARATH; Myb family transcription factor PHL6
TrEMBL	A0A1U8BM73	0.0	A0A1U8BM73_NELNU; myb family transcription factor PHL6 isoform X1
STRING	XP_010278435.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	1e-110	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838]