PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_021148-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

SBP

Protein Properties

Length: 465aa MW: 50992.6 Da PI: 7.9606

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_021148-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	134.3	3.8e-42	183	260	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC+ dls+ak+yhrrh+vCe hsk+p+v+v+gle+rfCqqCsrfh+lsefDe+krsCrrrL++hn+rrrk+q+ NNU_021148-RA 183 RCQVEGCNLDLSSAKDYHRRHRVCESHSKCPKVIVAGLERRFCQQCSRFHDLSEFDEKKRSCRRRLSDHNARRRKPQP 260 6**************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	4.2E-35	177	245	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	33.479	181	258	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.31E-39	182	263	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	5.3E-32	184	257	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0048653	Biological Process	anther development
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence Send to blast
MRTSSVMEWN PKTPSQWDWE NLVMFNGKAN EIPRQVQPTD WGIEGDGGID NGSVYSSAGG 60 GCSGSDLGHG SSSKSSVSAS VDSSSKGGIK MSNFNFETAE ALSKDFRNKK ELPRLEDTET 120 SPTLGVSGST EPLIGLKLGK RTYFEDICAG STIKHSSFSV IPTSSSTTAK RSRASYQSTQ 180 TPRCQVEGCN LDLSSAKDYH RRHRVCESHS KCPKVIVAGL ERRFCQQCSR FHDLSEFDEK 240 KRSCRRRLSD HNARRRKPQP EAIQFNSARL SSSFYDGRQQ MNLVLNRVPL IHTRPAADPT 300 WESASDYKLT QTRGSLIRPA KAGGIDGQLH LPSNEMPNAI SRHGHDSDRL LSSRGTNAEI 360 LSQGLEASGV ASNLDTTPDL RRALSLLSTN SWGSTDPEPT SLDQIMHTNH TRMAQPVVPQ 420 DLPPPSSEYW QVEHQPAVSR VHSLGADGNG IQCSFGMESE VLNSV

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence Send to blast

MRTSSVMEWN PKTPSQWDWE NLVMFNGKAN EIPRQVQPTD WGIEGDGGID NGSVYSSAGG  60
GCSGSDLGHG SSSKSSVSAS VDSSSKGGIK MSNFNFETAE ALSKDFRNKK ELPRLEDTET  120
SPTLGVSGST EPLIGLKLGK RTYFEDICAG STIKHSSFSV IPTSSSTTAK RSRASYQSTQ  180
TPRCQVEGCN LDLSSAKDYH RRHRVCESHS KCPKVIVAGL ERRFCQQCSR FHDLSEFDEK  240
KRSCRRRLSD HNARRRKPQP EAIQFNSARL SSSFYDGRQQ MNLVLNRVPL IHTRPAADPT  300
WESASDYKLT QTRGSLIRPA KAGGIDGQLH LPSNEMPNAI SRHGHDSDRL LSSRGTNAEI  360
LSQGLEASGV ASNLDTTPDL RRALSLLSTN SWGSTDPEPT SLDQIMHTNH TRMAQPVVPQ  420
DLPPPSSEYW QVEHQPAVSR VHSLGADGNG IQCSFGMESE VLNSV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	7e-29	184	257	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	239	256	KKRSCRRRLSDHNARRRK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019055864.1	0.0	PREDICTED: squamosa promoter-binding-like protein 3 isoform X2
TrEMBL	A0A1U8QAP4	0.0	A0A1U8QAP4_NELNU; squamosa promoter-binding-like protein 3 isoform X2
STRING	XP_010278483.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.3	5e-79	squamosa promoter binding protein-like 2