PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_021160-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C3H
Protein Properties Length: 434aa    MW: 47164 Da    PI: 7.1279
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_021160-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.65.1e-09111131526
                    --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     C++++  G C+yGd+C++ H+
  NNU_021160-RA 111 VCHYWMT-GKCSYGDKCRYLHS 131
                    6******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.162450IPR000571Zinc finger, CCCH-type
SMARTSM003560.0592549IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-6105131IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-7105129IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-6106132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.366106133IPR000571Zinc finger, CCCH-type
PfamPF006428.7E-7111131IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.105.8E-44130426IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003204.4E-4137176IPR001680WD40 repeat
SuperFamilySSF509981.33E-38140429IPR011047Quinoprotein alcohol dehydrogenase-like superfamily
PfamPF004000.0016140176IPR001680WD40 repeat
PROSITE profilePS5008212.814144185IPR001680WD40 repeat
PROSITE profilePS5029419.749144346IPR017986WD40-repeat-containing domain
PROSITE patternPS006780163177IPR019775WD40 repeat, conserved site
PRINTSPR003201.3E-6163177IPR020472G-protein beta WD-40 repeat
SMARTSM00320180216253IPR001680WD40 repeat
SMARTSM003201.9E-5260297IPR001680WD40 repeat
PfamPF117151.5E-4264309No hitNo description
PROSITE profilePS5008213.082267306IPR001680WD40 repeat
PROSITE patternPS006780284298IPR019775WD40 repeat, conserved site
PRINTSPR003201.3E-6284298IPR020472G-protein beta WD-40 repeat
SMARTSM003203.1E-4300337IPR001680WD40 repeat
PRINTSPR003201.3E-6324338IPR020472G-protein beta WD-40 repeat
SMARTSM003203.7341384IPR001680WD40 repeat
SMARTSM003205.5387424IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MDVDSAGRDG NKRVFNRLGA AATDKSQKVC YHWRAGRCNR YPCPFLHREL PPPNGDGTPA  60
KRSQGFVDDR SFSGPPSIRR APNHTQMSST WGRSQGGAGG VRVPHKTQDK VCHYWMTGKC  120
SYGDKCRYLH SWSFGDCFSL LTQLEGHQKV VTGIALPSGS DKLYSGSKDE SVXVWDCQTG  180
QCAGVVNLGG EIGCMISEGP WVFVGIPNGV KAWNTQTATD LSLDGPVGQV YSLAVGNEML  240
FAGIQDSNIL AWKFSAATNS FQPAASLQGH TLAVVSLVVG ANRLYSGSMD HTIRVWDLDT  300
LQCLQTLTDH TSVVMSVLCW DRFLLSCSLD KTIKVWVATE SGGLEVTYTH NEEHGVLALC  360
GIHDAQAKPV LLCSCNDNTV HLYDLPSFSE RGKIFSKEEV RAIQIGPGGL FFTGDGTGEL  420
RVWKWSTEAA STAP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A3e-221414278322Tako8
6g6n_A3e-221414278322Tako8
6g6n_B3e-221414278322Tako8
6g6n_C3e-221414278322Tako8
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010278504.10.0PREDICTED: zinc finger CCCH domain-containing protein 48-like isoform X1
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A1U8BMD80.0A0A1U8BMD8_NELNU; zinc finger CCCH domain-containing protein 48-like isoform X1
STRINGXP_010278504.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1