PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_021212-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

HD-ZIP

Protein Properties

Length: 714aa MW: 77095.5 Da PI: 6.6641

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_021212-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	37.5	4e-12	111	155	1	45
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVk 45 +++ +++t++q++eLe+lF+++++p++++r eL+k+l L+ rq + NNU_021212-RA 111 KKRYHRHTPQQIQELEALFKECPHPDEKQRNELSKRLCLESRQTQ 155 688999***********************************9965 PP
2	START	150	2.1e-47	280	432	65	206
HCCCGGCT-TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EES CS START 65 llddkeqWdetla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaell 148 l ++ +W e+++ + +t+evissg alqlm aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d+ ++ ++ +v +++l NNU_021212-RA 280 ALSVS-RWAEMFPcmiaRTSTTEVISSGmggtrnCALQLMHAELQVLSPLVPiREVKFLRFCKQHAEGVWAVVDVSIDHILRETSnEPVFVSCRRL 374 55666.9****9999**********************************************************99988889***** PP SEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 149 pSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 pSg+++++++ng+skvtwveh +++++++h+l+r+l++ g+ +ga++wvatlqrqce+ NNU_021212-RA 375 PSGCVVQDMPNGYSKVTWVEHGEYDESSIHQLYRPLLRAGMGFGAQRWVATLQRQCEC 432 ******************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.24E-10	93	155	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.4E-13	96	154	IPR009057	Homeodomain-like
PROSITE profile	PS50071	8.6	108	156	IPR001356	Homeobox domain
CDD	cd00086	5.14E-9	110	155	No hit	No description
Pfam	PF00046	1.4E-9	111	155	IPR001356	Homeobox domain
SMART	SM00234	2.2E-25	207	432	IPR002913	START domain
CDD	cd08875	2.44E-82	277	431	No hit	No description
SuperFamily	SSF55961	4.12E-22	283	432	No hit	No description
PROSITE profile	PS50848	30.827	285	435	IPR002913	START domain
Pfam	PF01852	6.4E-41	285	432	IPR002913	START domain
SuperFamily	SSF55961	2.75E-21	460	707	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 714 aa Download sequence Send to blast
MSFGGFLDSG SGGGARVVAD IPYSNMPAGA IAQPRLLSPS LAKSMFNSPG LSLALKTGME 60 GQGEVGRIGE NLDTGAVGRN KEDGYESRSG SDNMEGASGD DQDGDNNPPR KKRYHRHTPQ 120 QIQELEALFK ECPHPDEKQR NELSKRLCLE SRQTQLERHE NSILRQENDK LRAENMSIRD 180 AMRNPICSNC GGPAMLGDIS LEEQHLRIEN ARLKDELDRV CALAGKFLGR PVSSLATSIP 240 PPMPSSSLEL AVGSNGFGGL NTVAATLPLV SDFGGGVSSA LSVSRWAEMF PCMIARTSTT 300 EVISSGMGGT RNCALQLMHA ELQVLSPLVP IREVKFLRFC KQHAEGVWAV VDVSIDHILR 360 ETSNEPVFVS CRRLPSGCVV QDMPNGYSKV TWVEHGEYDE SSIHQLYRPL LRAGMGFGAQ 420 RWVATLQRQC ECLAILMSST LPARDHTAIT PSGRRSMLKL AQRMTDNFCA GVCASAVHKW 480 NKLCAGNVDE DVRVMTRKSV DDPGEPPGVV LSAATSVWLP VSPQRLFDFL RDERLRSEWD 540 ILSNGGPMQE MAHIAKGQDH GNCVSLLRAS VSPSSHPSCS NFQLAMNANQ SSMLILQETC 600 IDAAGSLVVY APVDIPAMHL VMNGGDSAYV ALLPSGFAIV PDGPGSRGPI NSNHHHTNGN 660 GSSQRVGGSL LTVAFQILVN NLPTAKLTVE SVETVNNLIS CTVQKIKAAL HCEN

Sequence ? help Back to Top

Protein Sequence Length: 714 aa Download sequence Send to blast

MSFGGFLDSG SGGGARVVAD IPYSNMPAGA IAQPRLLSPS LAKSMFNSPG LSLALKTGME  60
GQGEVGRIGE NLDTGAVGRN KEDGYESRSG SDNMEGASGD DQDGDNNPPR KKRYHRHTPQ  120
QIQELEALFK ECPHPDEKQR NELSKRLCLE SRQTQLERHE NSILRQENDK LRAENMSIRD  180
AMRNPICSNC GGPAMLGDIS LEEQHLRIEN ARLKDELDRV CALAGKFLGR PVSSLATSIP  240
PPMPSSSLEL AVGSNGFGGL NTVAATLPLV SDFGGGVSSA LSVSRWAEMF PCMIARTSTT  300
EVISSGMGGT RNCALQLMHA ELQVLSPLVP IREVKFLRFC KQHAEGVWAV VDVSIDHILR  360
ETSNEPVFVS CRRLPSGCVV QDMPNGYSKV TWVEHGEYDE SSIHQLYRPL LRAGMGFGAQ  420
RWVATLQRQC ECLAILMSST LPARDHTAIT PSGRRSMLKL AQRMTDNFCA GVCASAVHKW  480
NKLCAGNVDE DVRVMTRKSV DDPGEPPGVV LSAATSVWLP VSPQRLFDFL RDERLRSEWD  540
ILSNGGPMQE MAHIAKGQDH GNCVSLLRAS VSPSSHPSCS NFQLAMNANQ SSMLILQETC  600
IDAAGSLVVY APVDIPAMHL VMNGGDSAYV ALLPSGFAIV PDGPGSRGPI NSNHHHTNGN  660
GSSQRVGGSL LTVAFQILVN NLPTAKLTVE SVETVNNLIS CTVQKIKAAL HCEN

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the DNA sequence 5'-GCATTAAATGC-3'. {ECO:0000269\|PubMed:16778018}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010278578.1	0.0	PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X2
Swissprot	Q9LTK3	0.0	HDG7_ARATH; Homeobox-leucine zipper protein HDG7
TrEMBL	A0A438DAV6	0.0	A0A438DAV6_VITVI; Homeobox-leucine zipper protein ROC2
STRING	GSMUA_Achr11P21700_001	0.0	(Musa acuminata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52170.1	0.0	homeodomain GLABROUS 7

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]