PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_021222-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family HSF
Protein Properties Length: 318aa    MW: 35496.5 Da    PI: 5.298
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_021222-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.34e-36251162102
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl+k+y++++d++++++isw+e+g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F++g+k+ll++i
  NNU_021222-RA  25 FLTKTYQLVDDPSIDDVISWNEDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDCFRRGEKKLLCDI 111
                    9*****************************************************************99.........******************* PP

                    XXXXX CS
   HSF_DNA-bind  98 krkks 102
                    +r+k 
  NNU_021222-RA 112 HRRKI 116
                    **985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.4E-3818109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.9E-5921114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.41E-3522114IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.6E-3225114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.6E-212548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.6E-216375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.6E-217688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MAPPPVEQIG ESTTGDGQRS LPTPFLTKTY QLVDDPSIDD VISWNEDGST FIVWRPAEFA  60
RDLLPKYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANDCF RRGEKKLLCD IHRRKISPAA  120
AVSTVTTATA PAVRTGSPTN SGDDQVVSST SSPSAVAATV CRTTSCSSTA ELLDENERLR  180
KENMHLTHEL TQMKNLCNSI LALMTKYANS QQENASFLAE KPSSPLDLLP VKRFAEDNNA  240
DTGVGQSRVK TEEEEGSPRL FGVSIGVKRA KGSDEEQEHQ QQEEKEDPPR SEVKSEPPDQ  300
QEHPWLKCSP QPNQRVCN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-252511429129Heat shock factor protein 1
5d5v_B1e-252511429129Heat shock factor protein 1
5d5v_D1e-252511429129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010278594.10.0PREDICTED: heat stress transcription factor B-2b-like
SwissprotQ9SCW41e-92HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A1U8BNE10.0A0A1U8BNE1_NELNU; heat stress transcription factor B-2b-like
STRINGXP_010278594.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.13e-89heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]