PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_021251-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

C3H

Protein Properties

Length: 737aa MW: 79655.8 Da PI: 6.5096

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_021251-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.5	4.8e-08	312	332	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg NNU_021251-RA 312 PCPDFRK-GACRRGDLCEYAHG 332 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.25.40.20	1.2E-17	37	181	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	2.95E-16	45	180	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	6.3E-9	83	156	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.62E-14	87	165	No hit	No description
SMART	SM00248	0.0037	87	117	IPR002110	Ankyrin repeat
PROSITE profile	PS50297	17.873	87	195	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	11.755	122	157	IPR002110	Ankyrin repeat
SMART	SM00248	3.3E-4	122	154	IPR002110	Ankyrin repeat
SMART	SM00356	1.2E-5	307	333	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.6E-4	311	334	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.169	312	334	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.3E-5	312	332	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.427	342	366	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 737 aa Download sequence Send to blast
MCGGPERLKS TSSSPSSPSS SEESKTPMKS MNHLTVETED SFSSLLELAA NNDVEGFKRS 60 LERDASAIDE IGLWYVRQKG SKQIVLEHRT PLMVAATYGS IDVLKLILAL SDADINRSCG 120 PDKSTALHCA ASGGSVNAVD VVKLLLLAGA NPNSVDANGH RPADVIVVSP KLPNVKAVLE 180 ELLASNGSDG SSIGELNLRV STSTSNSNSP PLSSSPENGS PSSASDSTSS PTIKFNDHPV 240 SSATEKKEYP IDPSLPDIKN SIYATDEFRM FSFKVRPCSR AYSHDWTECP FVHPGENARR 300 RDPRKYHYSC VPCPDFRKGA CRRGDLCEYA HGVFECWLHP XQYRTRLCKD GTGCMRRVCF 360 FAHTSEELRP LYVSTGSAVP SPRSTASAAS AMEMAAAMSL LPGSPSSVSV MSPSPFTPPM 420 SPSANGINHS SLAWPQPNVP TLHLPGSNLQ SSRLRSSLNA RDIPAEDFSM LQDFEAQQQQ 480 LLNDLSCFSQ PRLSSSTVNR SVRSKTLTPS NLEDLFTAEI SSSPRYSDQA ASAVFSPSHK 540 SAVLNQFQQQ QSMLSPINTN VFSPKNVDHS FLQASFGVPS PGRMSPRSME PLSPMSSRLS 600 AFAQREKQQQ QQLRSLSSRE LGSNTTAVVG SPVNSWTKWG SPNGMLDWAV NGDELGRFKR 660 SSSFELGNNG EEPDLSWVQS LVKESPPEIK DKLAIPTSVA AAASSAEVSN SNSQVEAIDH 720 SVLGAWLEQM QLDQLVA

Sequence ? help Back to Top

Protein Sequence Length: 737 aa Download sequence Send to blast

MCGGPERLKS TSSSPSSPSS SEESKTPMKS MNHLTVETED SFSSLLELAA NNDVEGFKRS  60
LERDASAIDE IGLWYVRQKG SKQIVLEHRT PLMVAATYGS IDVLKLILAL SDADINRSCG  120
PDKSTALHCA ASGGSVNAVD VVKLLLLAGA NPNSVDANGH RPADVIVVSP KLPNVKAVLE  180
ELLASNGSDG SSIGELNLRV STSTSNSNSP PLSSSPENGS PSSASDSTSS PTIKFNDHPV  240
SSATEKKEYP IDPSLPDIKN SIYATDEFRM FSFKVRPCSR AYSHDWTECP FVHPGENARR  300
RDPRKYHYSC VPCPDFRKGA CRRGDLCEYA HGVFECWLHP XQYRTRLCKD GTGCMRRVCF  360
FAHTSEELRP LYVSTGSAVP SPRSTASAAS AMEMAAAMSL LPGSPSSVSV MSPSPFTPPM  420
SPSANGINHS SLAWPQPNVP TLHLPGSNLQ SSRLRSSLNA RDIPAEDFSM LQDFEAQQQQ  480
LLNDLSCFSQ PRLSSSTVNR SVRSKTLTPS NLEDLFTAEI SSSPRYSDQA ASAVFSPSHK  540
SAVLNQFQQQ QSMLSPINTN VFSPKNVDHS FLQASFGVPS PGRMSPRSME PLSPMSSRLS  600
AFAQREKQQQ QQLRSLSSRE LGSNTTAVVG SPVNSWTKWG SPNGMLDWAV NGDELGRFKR  660
SSSFELGNNG EEPDLSWVQS LVKESPPEIK DKLAIPTSVA AAASSAEVSN SNSQVEAIDH  720
SVLGAWLEQM QLDQLVA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010278986.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30-like
Swissprot	P93755	0.0	C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A1U8BFW0	0.0	A0A1U8BFW0_NELNU; zinc finger CCCH domain-containing protein 30-like
STRING	XP_010278986.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	CCCH-type zinc finger protein with ARM repeat domain

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He L, et al. Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene. Plant Physiol., 2016. 171(3): p. 1675-85 [PMID:27208260]