PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_021392-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

bHLH

Protein Properties

Length: 518aa MW: 58186.7 Da PI: 4.8309

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_021392-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.8	2.2e-14	315	361	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h + Er+RR+++N++f Lr l+P++ +K + a+i+ A++YIk+L NNU_021392-RA 315 ANHFATERQRREQLNEKFKALRLLVPNP-----TKADRASIVGDAIDYIKEL 361 68************************.....9**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.45E-16	310	372	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.647	312	361	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.8E-12	315	361	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.99E-13	316	365	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.1E-14	316	372	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.1E-13	318	367	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 518 aa Download sequence Send to blast
MYEETQYYDP HDPQEMPGTE SVDIPSQTVT NCSGLTPLIS SLQASLRLSS SSTSEDMPDH 60 HNPSGDTSAS PVAASIGIDL QQQLGFELEH ELNNQLIQDL LHDPTPEPFK QPNWDAEEQE 120 MQDLSYQNEQ PLLQQYHQIH DQEVQYQQQQ QQIDLQHNVH CFNPPFGHPP YTTTPDLLNL 180 LQLPSCTVSS LLPNSSSISF TNSSKKRPNY QNSLDIFGEL PVADNTAVTT GFYDHPPFHL 240 NLPPQPPVFR ELFHSLPQNY SFPGSRNDSF FGGLGEREVA GGVYQDGDGR QFENPVLDFR 300 REMSCLGNGG EAKGANHFAT ERQRREQLNE KFKALRLLVP NPTKADRASI VGDAIDYIKE 360 LLRTVDELKV LVDKKRSGRR GNKKLKTENE GAGDMESSSV KPLGTVTDKE QSFNGSLRSS 420 WLQRKSKDTE VDVRIIDDEV TIKLIQRKRM NCLLFVSKTL DELQLDLLHV AGGNIGDYYS 480 FLFNTKIYEG SSVYASAIAK KLIEVVDRQY AALPPGSF

Sequence ? help Back to Top

Protein Sequence Length: 518 aa Download sequence Send to blast

MYEETQYYDP HDPQEMPGTE SVDIPSQTVT NCSGLTPLIS SLQASLRLSS SSTSEDMPDH  60
HNPSGDTSAS PVAASIGIDL QQQLGFELEH ELNNQLIQDL LHDPTPEPFK QPNWDAEEQE  120
MQDLSYQNEQ PLLQQYHQIH DQEVQYQQQQ QQIDLQHNVH CFNPPFGHPP YTTTPDLLNL  180
LQLPSCTVSS LLPNSSSISF TNSSKKRPNY QNSLDIFGEL PVADNTAVTT GFYDHPPFHL  240
NLPPQPPVFR ELFHSLPQNY SFPGSRNDSF FGGLGEREVA GGVYQDGDGR QFENPVLDFR  300
REMSCLGNGG EAKGANHFAT ERQRREQLNE KFKALRLLVP NPTKADRASI VGDAIDYIKE  360
LLRTVDELKV LVDKKRSGRR GNKKLKTENE GAGDMESSSV KPLGTVTDKE QSFNGSLRSS  420
WLQRKSKDTE VDVRIIDDEV TIKLIQRKRM NCLLFVSKTL DELQLDLLHV AGGNIGDYYS  480
FLFNTKIYEG SSVYASAIAK KLIEVVDRQY AALPPGSF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010278769.1	0.0	PREDICTED: transcription factor EAT1-like
TrEMBL	A0A1U8BFE1	0.0	A0A1U8BFE1_NELNU; transcription factor EAT1-like
STRING	XP_010278769.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31210.1	1e-75	bHLH family protein