PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_021433-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

ARF

Protein Properties

Length: 341aa MW: 38330.8 Da PI: 8.9553

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_021433-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	65	1.1e-20	13	114	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k+lt+sd++++g +++ ++ ae++ +++ + ++l+ +d++ W++++iy+++++r++lt++W+ Fv+ +gL +gD+v+F ++++ NNU_021433-RA 13 FCKTLTTSDTNTHGGFSVLRRAAEKIflpldfSMQ-PLAQELVARDLHDVAWTFRHIYQGQPKRHLLTTCWSVFVSTKGLLAGDSVLFI--RDEKS 105 99***************************7555.4778***********************************************..45666 PP ..EEEEE-S CS B3 91 elvvkvfrk 99 +l+++ +r+ NNU_021433-RA 106 QLLLGTRRA 114 679988886 PP
2	Auxin_resp	110.1	2.3e-36	139	221	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras+s+Fv++++k+++a++++vs+GmR +m+f te+s +++Gt++g+sdldpvrW+nS+W +L+ NNU_021433-RA 139 AAHAAANNSPFTIFYNPRASPSKFVIPLSKYNQAMYTQVSLGMRCRMMFGTEESGVCKYMGTITGISDLDPVRWKNSQWHNLQ 221 79******************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	4.97E-38	4	142	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	5.0E-36	5	128	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	9.29E-14	12	105	No hit	No description
PROSITE profile	PS50863	9.77	13	115	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.9E-19	13	114	IPR003340	B3 DNA binding domain
SMART	SM01019	1.4E-16	13	115	IPR003340	B3 DNA binding domain
Pfam	PF06507	9.1E-32	139	221	IPR010525	Auxin response factor

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009725	Biological Process	response to hormone
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MGLKQSKQPT EFFCKTLTTS DTNTHGGFSV LRRAAEKIFL PLDFSMQPLA QELVARDLHD 60 VAWTFRHIYQ GQPKRHLLTT CWSVFVSTKG LLAGDSVLFI RDEKSQLLLG TRRASRQQPA 120 LSSSVISSDS MHIGILAAAA HAAANNSPFT IFYNPRASPS KFVIPLSKYN QAMYTQVSLG 180 MRCRMMFGTE ESGVCKYMGT ITGISDLDPV RWKNSQWHNL QVGWDESTVG ERPSRVSIWD 240 IEHVVTPFYI CPPPFFRSKF PRQSGMSDSE SDVENVFKRA MPWLADDFGM KDTQSPIFPG 300 LSLIQWMNMQ QNPQFSVAQS GFFPSMDIGI KQSGMVKQDS S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ldu_A	1e-116	3	242	148	388	Auxin response factor 5
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin under dark condition. {ECO:0000269\|PubMed:17408882}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010273878.1	0.0	PREDICTED: auxin response factor 7-like
Swissprot	A3B9A0	1e-175	ARFP_ORYSJ; Auxin response factor 16
TrEMBL	A0A1U8BCB5	0.0	A0A1U8BCB5_NELNU; Auxin response factor
STRING	XP_010273878.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	1e-173	auxin response factor 19

Publications ? help Back to Top
Shen C, et al. OsARF16, a transcription factor, is required for auxin and phosphate starvation response in rice (Oryza sativa L.). Plant Cell Environ., 2013. 36(3): p. 607-20 [PMID:22913536] Shen C, et al. OsARF16 is involved in cytokinin-mediated inhibition of phosphate transport and phosphate signaling in rice (Oryza sativa L.). PLoS ONE, 2014. 9(11): p. e112906 [PMID:25386911] Shen C, et al. OsARF16, a transcription factor regulating auxin redistribution, is required for iron deficiency response in rice (Oryza sativa L.). Plant Sci., 2015. 231: p. 148-58 [PMID:25576000]