PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_021455-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family GRAS
Protein Properties Length: 784aa    MW: 85556 Da    PI: 6.5093
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_021455-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS415.74.1e-1274217772374
           GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     +lLl+cAeavs++++e+a+++L ++sel++p g++ qR+aayf eA++arl++s+ ++y+ lp  +++    ++ ++a+++f+ +sP++kfsh+t
  NNU_021455-RA 421 LTLLLQCAEAVSADNFEEANKMLLEISELSTPFGTSAQRVAAYFSEAMSARLVSSCLGIYAPLPNAPAH---NQKIVSAFQVFNGISPFVKFSHFT 513
                    579*********************************************************999999998...789999****************** PP

           GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                    aNqaI ea+e+eervHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g     s e+le+tg+rL++fAe+lg+pfef + va+++ +l++e+
  NNU_021455-RA 514 ANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPFVRLTGLGT----SMEALEATGKRLSDFAETLGLPFEFFP-VADKVGNLDPER 604
                    ****************************************************....***************************.7*********** PP

           GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289
                    L+v+++Ea+aV++ +  h+l+d ++s ++    +L+l+++l Pkvv++veq+++h ++sFl rf+ea++yysalfdsl a++++eseer+ vE++l
  NNU_021455-RA 605 LNVSKREAVAVHWLH--HSLYDVTGSDNN----TLWLLQRLAPKVVTIVEQDLSH-AGSFLGRFVEAIHYYSALFDSLGASYGEESEERHIVEQQL 693
                    **************9..999999999999....**********************.899************************************* PP

           GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    l+rei+nv+a  g +r  + + +++Wre+l+++GF+ ++l  +aa+qa lll +++ dgy++ e++g+l lgWkd +L+++SaWr
  NNU_021455-RA 694 LSREIRNVLAVGGPARSGEVK-FHNWREKLKQSGFRGISLAGNAATQATLLLGMFPCDGYTLVEDNGTLKLGWKDLSLLTASAWR 777
                    ***************888776.**************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.975394757IPR005202Transcription factor GRAS
PfamPF035141.4E-124421777IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 784 aa     Download sequence    Send to blast
MAACVLLGNG NGSGSSNSSG SSRLGSTSNS CEERNVPPPA LPSTAVAQPQ QLRHYDDLLV  60
DGKMVVRKRT ASEFDLQTGG DCHRFIRRAT TTNSLPVIDR SSLAFQPCNA TSLDNNNNHS  120
TTNPNPISIP NNHSAILPYP TNSTLTSGVP GLSSNLTYYL DSSLHTLPPT PPPQTGPVCG  180
FSGLPLFPSE RDRTTTTVSA GGLLPILSPS PMDDSSTATA WIDSVIKDLI HSSTSVSIPQ  240
LIQNVREIIY PCNPNLAALL EYRLRSLTEP LADHHHERRR NEAVSLQRQP FQGSSSLKLY  300
LASGLDNPLS YPLTDSSSQH AMIMNQYTSL EANPSSTHEG SQDVRRSTAT SPSVAPPLLT  360
LNQSLPQHQQ QQQQQHQPQQ QSSPSAAPAT TASATPTVVT REKKEEIRQQ QKRDEEGLHL  420
LTLLLQCAEA VSADNFEEAN KMLLEISELS TPFGTSAQRV AAYFSEAMSA RLVSSCLGIY  480
APLPNAPAHN QKIVSAFQVF NGISPFVKFS HFTANQAIQE AFEREERVHI IDLDIMQGLQ  540
WPGLFHILAS RPGGPPFVRL TGLGTSMEAL EATGKRLSDF AETLGLPFEF FPVADKVGNL  600
DPERLNVSKR EAVAVHWLHH SLYDVTGSDN NTLWLLQRLA PKVVTIVEQD LSHAGSFLGR  660
FVEAIHYYSA LFDSLGASYG EESEERHIVE QQLLSREIRN VLAVGGPARS GEVKFHNWRE  720
KLKQSGFRGI SLAGNAATQA TLLLGMFPCD GYTLVEDNGT LKLGWKDLSL LTASAWRPTN  780
THRY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.04037783380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269|PubMed:16339910}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010278894.10.0PREDICTED: protein SCARECROW
SwissprotQ2Z2E90.0SCR_IPONI; Protein SCARECROW
TrEMBLA0A1U8BC330.0A0A1U8BC33_NELNU; protein SCARECROW
STRINGXP_010278894.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein