PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_021524-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family WRKY
Protein Properties Length: 288aa    MW: 31647.9 Da    PI: 4.3228
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_021524-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.54.4e-3184142259
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers++dp +++itY+ eHnh+
  NNU_021524-RA  84 SDMWAWRKYGQKPIKGSPYPRGYYRCSSSkGCLARKQVERSRTDPGMFIITYTAEHNHP 142
                    79*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-3169144IPR003657WRKY domain
PROSITE profilePS5081134.31478144IPR003657WRKY domain
SuperFamilySSF1182901.57E-2681144IPR003657WRKY domain
SMARTSM007742.1E-3783143IPR003657WRKY domain
PfamPF031061.0E-2585142IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MEVDWDLQAV VRGCAIGTTP TTTATFMEDP LFCFSPSSGL QQDDHLHYFS DPFQSPTMAF  60
EELEDLKNQQ KRVVCQVPAE GLSSDMWAWR KYGQKPIKGS PYPRGYYRCS SSKGCLARKQ  120
VERSRTDPGM FIITYTAEHN HPLPTHRNSL AGSTRQKFPT SQRPTTGEPD TSTTKPSCAS  180
SPTSGSGLSP TTPLTTSMED ELLQPIKQES QEDDGEEMVE DDEDDESLIP DMVINDDFFM  240
GLEEIAGSAN ISSSSTSAAF EDCFSDHLPA SFPLPWHAHN AATTAGGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-2274145880Disease resistance protein RRS1
5w3x_D3e-2274145880Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010279056.11e-139PREDICTED: WRKY transcription factor 22
TrEMBLA0A1U8BG041e-138A0A1U8BG04_NELNU; WRKY transcription factor 22
STRINGXP_010279056.11e-138(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.12e-63WRKY family protein