PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_021557-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 261aa    MW: 28664.7 Da    PI: 8.7493
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_021557-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.31.4e-1374120354
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    ++h+e+ErrRR+riN  +++Lr+l+P       +K++Ka+ L +++ ++k+L
  NNU_021557-RA  74 KSHSEAERRRRERINAHLSTLRKLVPCT-----GKMDKASLLAEVISHVKEL 120
                    58*************************9.....9****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.61571120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-1174120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.4E-1575123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-1475125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-1377126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.08E-484122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MGSFSWNSNA VYKTEFPKLF DGFSPNAGFR MMGRSGSASS SSLVLDSERG ELVKAPEKLG  60
QKAISEEKAI AALKSHSEAE RRRRERINAH LSTLRKLVPC TGKMDKASLL AEVISHVKEL  120
KKNATEASKG SVIPMDVDEV RVEPHGDGCD GRSFLITASL CCDYRPELLA DIRQVLDTFH  180
LKTIRAEIST LGSRVKNVFV MTSHEEGITD NATEVCHLVS SIEQALKSVI QKNTSPEFSP  240
GIILPNKRRR VSPFESLSSS S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17984ERRRRE
2246250KRRRV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010279103.10.0PREDICTED: transcription factor bHLH30-like
TrEMBLA0A1U8BG410.0A0A1U8BG41_NELNU; transcription factor bHLH30-like
STRINGXP_010279103.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-40bHLH family protein