PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_021559-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

C2H2

Protein Properties

Length: 139aa MW: 15680 Da PI: 8.2119

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_021559-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00021	19	39	1	21
EEETTTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHir 21 y+C++C + ++nL+ H r NNU_021559-RA 19 YRCKKCRRIVAAQENLVFHER 39 9******************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 139 aa Download sequence Send to blast
MATANNSDVG SDSKSQVIYR CKKCRRIVAA QENLVFHERG EGEKCFKWKK RDGAPWECQK 60 EPPECTSIFV EPMKWMQSGS LALHFGLSVE EGCVEDKLQC MGCKARLGSF NWAGMQCSCG 120 AWVNPAFQLH KSRIDKCHT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6n8m_Y	2e-15	20	136	231	343	Tyrosine-protein phosphatase YVH1
6n8n_Y	2e-15	20	136	231	343	Tyrosine-protein phosphatase YVH1
6n8o_Y	2e-15	20	136	231	343	Tyrosine-protein phosphatase YVH1
6rzz_s	2e-15	20	136	231	343	Tyrosine-protein phosphatase YVH1
6s05_s	2e-15	20	136	231	343	Tyrosine-protein phosphatase YVH1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010279105.1	9e-90	PREDICTED: probable inactive dual specificity protein phosphatase-like At4g18593
Refseq	XP_010279106.1	9e-90	PREDICTED: probable inactive dual specificity protein phosphatase-like At4g18593
Swissprot	Q570P7	6e-51	DUSL1_ARATH; Probable inactive dual specificity protein phosphatase-like At4g18593
TrEMBL	A0A1U8BCL5	2e-88	A0A1U8BCL5_NELNU; probable inactive dual specificity protein phosphatase-like At4g18593
STRING	XP_010279105.1	4e-89	(Nelumbo nucifera)