PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_021637-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ARF
Protein Properties Length: 978aa    MW: 107084 Da    PI: 6.5366
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_021637-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.11.9e-24232333199
                    EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                    f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F   + +++
  NNU_021637-RA 232 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL--RGDNG 324
                    99****************************963.3445679************************************************..34899 PP

                    ..EEEEE-S CS
             B3  91 elvvkvfrk 99 
                    el+++++r+
  NNU_021637-RA 325 ELRLGIRRA 333
                    99****996 PP
2Auxin_resp1241.1e-40358439182
     Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                    +a+a+stksvF+++YnPras+seF+v+++k++k+lk ++s+Gm+fkm+feted++err++G+v+g++d+dpvrWp+SkWr+L
  NNU_021637-RA 358 VASAVSTKSVFNIYYNPRASQSEFIVPFRKFHKSLKLPFSIGMKFKMRFETEDAAERRYTGLVTGINDMDPVRWPGSKWRCL 439
                    6899*****************************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.7E-40227335IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-42228338IPR015300DNA-binding pseudobarrel domain
CDDcd100177.96E-23230332No hitNo description
PROSITE profilePS5086313.437232334IPR003340B3 DNA binding domain
SMARTSM010193.3E-24232334IPR003340B3 DNA binding domain
PfamPF023622.4E-22232333IPR003340B3 DNA binding domain
PfamPF065072.1E-35359439IPR010525Auxin response factor
PROSITE profilePS5174518.361801889IPR000270PB1 domain
SuperFamilySSF542775.2E-8803869No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010050Biological Processvegetative phase change
GO:0010158Biological Processabaxial cell fate specification
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 978 aa     Download sequence    Send to blast
MSRASSLVSF ACFQLMDPIK WAAGFCGPSK VHPILSTTTQ AAEGEEWRIG LLDKKSKGKQ  60
EEEYGRMGSG FMGGVIDLNT VTDDEDAASA VVVESGPASL SSPSSSSSAS STSASLCSSS  120
SSAGVCLELW HACAGPLISL PKKGSAVVYL PQGHLEHISE FPATVYNLPP HVFCRVVDVK  180
LHVEVATDEV YAQVSLLPET EIEQKLLRGD METDGEDEEI EGSAKLTTPH MFCKTLTASD  240
TSTHGGFSVP RRAAEDCFPP LDYKQQRPSQ ELVAKDLHGV EWKFRHIYRG QPRRHLLTTG  300
WSAFVNKKKL VSGDAVLFLR GDNGELRLGI RRAAQVKGGI PFPVLCSQSM NGGSLTAVAS  360
AVSTKSVFNI YYNPRASQSE FIVPFRKFHK SLKLPFSIGM KFKMRFETED AAERRYTGLV  420
TGINDMDPVR WPGSKWRCLL VRWDDDLETN RHNRVSPWEI EPLGPVSACS SLSAPGSKKT  480
RMTLPSSKPD FPVPNGTGFS DFRESLRFQK VLQGQEILGF GTPDGIDARN HHPSETWRCN  540
PGSNSFEIAA LGSGIRTPLR NSDYPFTGIG FSESVRFHKV LQGQEIFPKS PYGRANLAYE  600
NGRFGNVDGV HMSSAGNGWT TLMQGFNNHV QPSTPSVQVS SPSSVLMFQQ TSILYPRSAY  660
GINNQKGVDG NYCGLYGSQT SGVKIVPSSL CGQHSMEELG GNHTTNPSKE HIQLTSQYAS  720
SLASQPALKG GSQELLLTGG SGCRLFGFPL TKESCATHEK DATAPVASPS NEKLDLEPSL  780
EPSEEKQSHL KSPVLAKSVG NSCTKVHKQG SVVGRAIDLT KLDGYDDLIS ELERLFDMEG  840
LLNDPEKGWL VVYTDNEDDV MLVGDDPWQN DSRAYVGKRF DITLHVFLGN LEISLECLHS  900
SYHGLVSLGI CSTLPRMILF SFEDSAWLYL IHNYYGSAGN SATLFIMLLL YENDDGFFIR  960
TKEIVGKLKL AFHQTENK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-11912246716359Auxin response factor 1
4ldw_A1e-11912246716359Auxin response factor 1
4ldw_B1e-11912246716359Auxin response factor 1
4ldx_A1e-11912246716359Auxin response factor 1
4ldx_B1e-11912246716359Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00021PBMTransfer from AT2G33860Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under dark condition. {ECO:0000269|PubMed:17408882}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010260358.10.0PREDICTED: auxin response factor 3-like
SwissprotQ0JKI90.0ARFB_ORYSJ; Auxin response factor 2
TrEMBLA0A1U8A0F40.0A0A1U8A0F4_NELNU; Auxin response factor
STRINGXP_010260358.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.10.0ARF family protein
Publications ? help Back to Top
  1. Khanday I,Yadav SR,Vijayraghavan U
    Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways.
    Plant Physiol., 2013. 161(4): p. 1970-83
    [PMID:23449645]