PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_021638-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family HSF
Protein Properties Length: 364aa    MW: 41692.7 Da    PI: 4.7497
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_021638-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.66.4e-36411322102
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl+k+y++++d+++++++sw++ g+s++v+d+++f+ ++Lp+yFkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F +g+k+ll++i
  NNU_021638-RA  41 FLTKIYDMVDDPSTDDIVSWNRGGKSLIVWDPHSFSMNLLPRYFKHNNFSSFVRQLNTYGFRKIDPDK---------WEFANEGFLRGHKHLLKNI 127
                    9****************************************************************999.........******************* PP

                    XXXXX CS
   HSF_DNA-bind  98 krkks 102
                    kr+k+
  NNU_021638-RA 128 KRRKT 132
                    ***86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.4E-3937130IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.3E-6137130IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.67E-3637130IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.1E-204164IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.0E-3241130IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-207991IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434080104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-2092104IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MNPPGPVKEE FPEASSSYTA DQFMAPPQPM EGLNEIGPPP FLTKIYDMVD DPSTDDIVSW  60
NRGGKSLIVW DPHSFSMNLL PRYFKHNNFS SFVRQLNTYG FRKIDPDKWE FANEGFLRGH  120
KHLLKNIKRR KTLSQPPFLQ QALGHCVEVG RFGLDGEIDR LRRDKQALIF ELVKLRQQQQ  180
STRAQLQSME QRLQGAELKQ KQMVTFLARA LRNPTFIQQL VQQNEKRREL EEAISKKRRR  240
PIDQGPSDVH VAEAIQSGEE ENPIKVEAQE LGDLYGYEVS ELETLALEMQ GLSQAGKEPI  300
EEQEEQEEEL ESRSKALDNG FWEELFSESF PDESGTQGQG AETRENEDIN VLADRLGYLG  360
SSPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-253913218122Heat shock factor protein 1
5d5u_B1e-253913227131Heat shock factor protein 1
5d5v_B1e-253913227131Heat shock factor protein 1
5d5v_D1e-253913227131Heat shock factor protein 1
5hdg_A1e-25391328112Heat shock factor protein 1
5hdn_A1e-25391328112Heat shock factor protein 1
5hdn_B1e-25391328112Heat shock factor protein 1
5hdn_C1e-25391328112Heat shock factor protein 1
5hdn_D1e-25391328112Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123129LKNIKRR
2225239KRRELEEAISKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010279247.10.0PREDICTED: heat stress transcription factor A-2c
SwissprotQ8H7Y61e-123HFA2D_ORYSJ; Heat stress transcription factor A-2d
TrEMBLA0A1U8BPS70.0A0A1U8BPS7_NELNU; heat stress transcription factor A-2c
STRINGXP_010279247.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-111heat shock transcription factor A6B