PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_021640-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 467aa    MW: 51463.7 Da    PI: 9.3622
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_021640-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-057698123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   ++C++C+k F r  nL+ H r H
  NNU_021640-RA 76 FVCEICNKGFQRDQNLQLHRRGH 98
                   89*******************88 PP
2zf-C2H213.50.00021152174123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC++C+k++  +s+ k H +t+
  NNU_021640-RA 152 WKCEKCSKRYAVQSDWKAHSKTC 174
                    58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.71E-67598No hitNo description
Gene3DG3DSA:3.30.160.601.5E-57598IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9497698IPR007087Zinc finger, C2H2
PfamPF121717.3E-57698IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0177698IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807898IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.6E-4140173IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.71E-6147172No hitNo description
SMARTSM00355130152172IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MLPATMSNST SLSEEASVSS GNRVQDLSSL NPMFSAISQQ PQQQKIKKKR NLPGNPDPDA  60
EVIALSPKTL LATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRTSK EIKKRVYVCP  120
EPSCVHHHPS RALGDLTGIK KHFCRKHGEK KWKCEKCSKR YAVQSDWKAH SKTCGTREYR  180
CDCGTLFSRK DSFITHRAFC DALAEESARL STNPLATTNN LTDHPLHLNP QNPSPFFPFS  240
TQQRNFTNPS SQISLSSWDP SQNPNLTTQN SVQSKTGTHQ QQQQQQIPTI SPSPFFRDQP  300
HHKQLITSPF QHLQMATNGN SNISTAHMSA TALLQKAANF GVSALSSATQ AQSVGHMASS  360
INRLEELGTM SQVGAGMPPG YLGFPSGNLS TWQKNDRLTR DFLGLTGDCG GGGDGSVSVN  420
VKDLLSFTGG VDFAPYDRDH SVMKPPGFGF TEQAASEAWG DCGRLEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-37148212367Zinc finger protein JACKDAW
5b3h_F5e-37148212367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010279249.10.0PREDICTED: protein indeterminate-domain 12-like
SwissprotO227591e-136IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLA0A1U8BCQ40.0A0A1U8BCQ4_NELNU; protein indeterminate-domain 12-like
STRINGXP_010279249.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-125indeterminate(ID)-domain 12
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]