PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_021728-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family HSF
Protein Properties Length: 222aa    MW: 25716.2 Da    PI: 9.0913
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_021728-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.51e-33271182102
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl k+y ++ed++++ +isw+++g++fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+kv +++         weF +  F++g++ell++i
  NNU_021728-RA  27 FLLKTYMLVEDPATDGIISWNADGTAFVVWHPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVVTSR---------WEFYNGMFRRGQRELLCEI 113
                    9****************************************************************999.........******************* PP

                    XXXXX CS
   HSF_DNA-bind  98 krkks 102
                    +rkk 
  NNU_021728-RA 114 RRKKA 118
                    **985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.8E-3720111IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.85E-3422116IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-5423116IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.8E-3127116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-182750IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-186577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-187890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MSQPIPVEHE CDKDLLEYVR KSSPPPFLLK TYMLVEDPAT DGIISWNADG TAFVVWHPAE  60
FARDLLPTLF KHSNFSSFVR QLNTYGFRKV VTSRWEFYNG MFRRGQRELL CEIRRKKAWA  120
SKVHPIAPIQ TVPQESDEER GSASTSSSSG YSSLFDENKR LKRENNILNS ELVRMKNKCK  180
ELFDLVAHYT SSENIEEDER PKLFGVRLGV PVEKKRKESR AQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-232211615120Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010279495.11e-166PREDICTED: heat stress transcription factor B-3-like
SwissprotO222308e-69HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A1U8BH161e-165A0A1U8BH16_NELNU; heat stress transcription factor B-3-like
STRINGXP_010279495.11e-165(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.12e-65heat shock transcription factor B3