PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_021888-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C3H
Protein Properties Length: 367aa    MW: 39923.9 Da    PI: 6.7018
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_021888-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.74.1e-08114138126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    +kt+lC+ f++ GtC+y  +C+FaHg
  NNU_021888-RA 114 FKTKLCCKFRA-GTCPYITNCNFAHG 138
                    69*********.*************8 PP
2zf-CCCH18.34e-06188213126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    yk + C+ f+    C+yGd+C+F H+
  NNU_021888-RA 188 YKGRHCKKFYTDEGCPYGDNCTFLHD 213
                    77888********************7 PP
3zf-CCCH44.52.4e-14248273126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    +kt++C+ +  tG+C++G++C+FaHg
  NNU_021888-RA 248 WKTRICNKWEMTGYCPFGSKCHFAHG 273
                    8************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.6E-14111146IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.91E-8111144IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.953113140IPR000571Zinc finger, CCCH-type
SMARTSM003560.0037113139IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-5114138IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-9185215IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-7186215IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.23187215IPR000571Zinc finger, CCCH-type
SMARTSM003560.11187214IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-17243277IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-10244278IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.478247275IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-9247274IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-11248273IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MDYGGEAGFS GGNVGQIIPE IPGSGGVDNW IPGLNDQAIW ATEDDYGVWN GDASADTPSN  60
SNYDGRQSQT RSGSEPPNKK SRNSQVGDSQ GSGFSRDRDL PSSNRSKAIG KMFFKTKLCC  120
KFRAGTCPYI TNCNFAHGIE ELRKPPPNWQ EIVAAQDEDR GVSSEPREEH QIPSLSSSGL  180
GGETQRSYKG RHCKKFYTDE GCPYGDNCTF LHDEQSKARE SVAISLGPTI GSGYGNSGNG  240
PNQKPSNWKT RICNKWEMTG YCPFGSKCHF AHGLGELHRY GGGLVEVEGR DSSSAPPDSK  300
QVAVASKTQT DTVVASMASV PHSDVYMGIP PQRTSVLNQR PGQRPLQKWK GPDKISRIYG  360
DWIDDNE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010240878.10.0PREDICTED: zinc finger CCCH domain-containing protein 56
SwissprotQ84UQ31e-137C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A1U7YT770.0A0A1U7YT77_NELNU; zinc finger CCCH domain-containing protein 56
STRINGXP_010240878.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-126C3H family protein