PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_021906-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family MIKC_MADS
Protein Properties Length: 230aa    MW: 26641.2 Da    PI: 9.7944
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_021906-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.76.4e-28959151
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                   krien++nrqvt+skRr gi+KKA EL +LCda+v++i+fsstgk+ ey+s
  NNU_021906-RA  9 KRIENSTNRQVTYSKRRGGIMKKARELTILCDADVSLIMFSSTGKFSEYIS 59
                   79***********************************************86 PP
2K-box85.31.3e-28711711100
          K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhll.GedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                    yq+ sg +l+++++e++q++l+k k+ ++nL+re+R+++ Ge L+++s++eL++Leq+Le+slk iR++K++++ +q+e+ +kk ++lq e+ +L 
  NNU_021906-RA  71 YQQISGINLWKSHYETMQEHLNKQKEINNNLRREIRQRMaGEHLDDMSFEELRSLEQNLENSLKVIRERKYRVISTQTETYKKKIRNLQAEHANLL 166
                    79999*******************************9766*******************************************************9 PP

          K-box  96 kklee 100
                     ++ee
  NNU_021906-RA 167 CQIEE 171
                    99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.0E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.768161IPR002100Transcription factor, MADS-box
CDDcd002659.88E-39280No hitNo description
SuperFamilySSF554551.12E-37295IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-27323IPR002100Transcription factor, MADS-box
PfamPF003193.6E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-273859IPR002100Transcription factor, MADS-box
PfamPF014863.3E-1982169IPR002487Transcription factor, K-box
PROSITE profilePS5129716.54884175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MGRGKIEIKR IENSTNRQVT YSKRRGGIMK KARELTILCD ADVSLIMFSS TGKFSEYISH  60
TTTTKKIFDR YQQISGINLW KSHYETMQEH LNKQKEINNN LRREIRQRMA GEHLDDMSFE  120
ELRSLEQNLE NSLKVIRERK YRVISTQTET YKKKIRNLQA EHANLLCQIE ERDENPNCGL  180
VDHNGAGYKS ALGLANVGSH LFAFHLQSNH PNNLLRDGGL YGSHSLHHLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-17173171MEF2C
5f28_B5e-17173171MEF2C
5f28_C5e-17173171MEF2C
5f28_D5e-17173171MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010240899.11e-171PREDICTED: floral homeotic protein DEFICIENS-like
SwissprotQ003J22e-98TM6_VITVI; Agamous-like MADS-box protein TM6
TrEMBLA0A1U7Z2P81e-170A0A1U7Z2P8_NELNU; floral homeotic protein DEFICIENS-like
STRINGXP_010240899.11e-171(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.12e-73MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]