PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_021907-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family WRKY
Protein Properties Length: 497aa    MW: 54426.2 Da    PI: 7.5631
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_021907-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.22.2e-30255313259
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+H h+
  NNU_021907-RA 255 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDKSILITTYEGNHSHP 313
                    7*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-30247315IPR003657WRKY domain
PROSITE profilePS5081127.898249315IPR003657WRKY domain
SuperFamilySSF1182901.44E-26252315IPR003657WRKY domain
SMARTSM007741.9E-36254314IPR003657WRKY domain
PfamPF031061.8E-26256313IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MTLLHPGKFV RKIPGGDDNV TDNSVDRKHT IKEMDFFSDH HRRVEASRSS NGCLQDQEKR  60
DVLARTEPGV KTGLNLLTLN SGTERSLTEE KPKIQLSTLQ VERDRLIEEN RKLRSMLDQI  120
TKNYSALQTQ LLLVMQRQKR ENEHDEQRDD RNGMSSSTLS AQQFMDPGPS GALDLDEQLH  180
SDDEETQEQL PSPTSNKRDH VHDTNQISKK RQSIDDGPEQ TPQSWGGQKS PELAKAKGVE  240
QVSEVPCRKA RVSISDGCQW RKYGQKMAKG NPCPRAYYRC TMAVGCPVRK QVQRCAEDKS  300
ILITTYEGNH SHPLPLAATA MANTTSAAVD MLLSGSTTSK ETLATSGFFH PLPHASTMAT  360
LSASAPFPTI TLDLTQKLNS MQFLQAPPPT TPPFPVPLHG CTQLLGGQPV YIPPKLPLVP  420
AEMQVGQRQL SMVETVTAAI TTDPNFTAAL AAAISSIIGT PRSNNGGNSN NNSSPSGARA  480
SPESPQLPQS CTTFLTN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-192543151474WRKY transcription factor 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0311152e-54KF031115.1 Gossypium hirsutum WRKY transcription factor 103 (WRKY103) mRNA, complete cds.
GenBankKF6698282e-54KF669828.1 Gossypium hirsutum WRKY transcription factor 79 (WRKY79) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010279671.10.0PREDICTED: probable WRKY transcription factor 47
TrEMBLA0A1U8BDR10.0A0A1U8BDR1_NELNU; probable WRKY transcription factor 47
STRINGXP_010279671.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.17e-72WRKY family protein