PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_021915-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family M-type_MADS
Protein Properties Length: 241aa    MW: 27456.8 Da    PI: 8.8024
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_021915-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.75.3e-171150342
                   --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
         SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                   i n++ r+ tf kR++g++KK +ELS+LC++ ++ ii+s+
  NNU_021915-RA 11 IANETARKATFKKRKKGLMKKVSELSTLCGVSACAIIYSP 50
                   89*************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.6E-24160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.128149IPR002100Transcription factor, MADS-box
CDDcd002661.90E-22285No hitNo description
SuperFamilySSF554554.06E-25395IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-8323IPR002100Transcription factor, MADS-box
PfamPF003192.2E-181151IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-82338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MARKKVKLAL IANETARKAT FKKRKKGLMK KVSELSTLCG VSACAIIYSP YDSQPDVWPS  60
PPEAQRVIAR FKSLPEMEQS KKMMNQEAFL RQRISKVKEQ LKRQEKENRD LEITQLMNQA  120
LTGNKSLHDV GVEDLGDLAW MVEEKMKAIQ ERIELLTRTP PPPFLPVDEK RMMMRYGNGE  180
GGSEAERTTL EVAMEALQRQ SWFMDVMNPH EHVHVGCAGD DMVMPATYGE PASSWSNPFF  240
P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLALIANETARKATFKKRK
22125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010240843.10.0PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK33e-57AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A1U7Z1611e-180A0A1U7Z161_NELNU; agamous-like MADS-box protein AGL80
STRINGXP_010240843.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.14e-53AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]