PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_021919-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 752aa    MW: 80543.3 Da    PI: 7.0972
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_021919-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.63.4e-16478524455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  NNU_021919-RA 478 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 524
                    6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.5E-20471532IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-20472535IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.349474523IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.81E-17477528No hitNo description
PfamPF000101.1E-13478524IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-17480529IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 752 aa     Download sequence    Send to blast
MPLSEFHQMA KGKLESSQSK MNNCSTDQAF VPDHDFVELV WENGQILMQG QSSKTRRSPS  60
SNNLPSYISK VQDKDGGDAT NLKIGRSRTE EHVLNDFTST VPSGNMGLAS EEEMVPWLNY  120
SLDDSLQHDY CSEFFSELTG VNLNALSTQN NSFPIDKNSS CGQISRDLNI ASVYFDKNPQ  180
GNASKGVGGN PEPIRPSSNQ LRSSSLQQCQ ISLPSLRPRV SDLINSNTNN ADKASCGNSS  240
DTPTSNGGLP NTKMQRQDPG PTRPPPQNNI SSGLMNFSHF SRPAAFVKAN LHNLGAVASP  300
GLSSIDNLRS NGKASAAGSS NPVESTLIDS TSGSRNATSF HNQRASVPAE GEPKPSKPPK  360
EQFSAENSEV VFREEAHRRK RSPDRVIDHT SSFAASTAVG KPDGERAVEP AVASSSVCSV  420
NSGGGASDDP KNTLKRKSRD GDESEYQSED LEEESVGVKK LAPSRGGTSA KRSRAAEVHN  480
LSERRRRDRI NEKMRALQEL IPNCNKVDKA SMLDEAIEYL KTLQLQVQIM SMGSGLCMPP  540
MMLPPGMQHL HMPHLAHFSP MGVGMGMGMG MGLGFGMGMV DMSSGSSGRP LIQVPSMHGR  600
QFPCPPISGP ASLPGMAGAN LQMFGLPSQG LPMSIPRAPI IPLSGGSSTK SISLPDTSGT  660
VTPVKVPDSA PPSSSKEPEP NINPQMMHKT TADCSPDHIS TQILEGICIC TFTRDTSAVK  720
SCLNLVCPTC KCYGAQGMDA CHGYGIWYTE KV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1482487ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010240811.10.0PREDICTED: transcription factor PIF3 isoform X2
TrEMBLA0A1U7YT230.0A0A1U7YT23_NELNU; transcription factor PIF3 isoform X2
STRINGXP_010240809.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-33phytochrome interacting factor 3