PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_021998-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family NF-YB
Protein Properties Length: 121aa    MW: 13180.9 Da    PI: 5.2184
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_021998-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB172.35.3e-5431121292
          NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 
                    reqdrflPian+srimkkv+P n+ki+kdak+ vqecvsefisf+tseasdkcqrekrktingddllwa+atlGfedy++plk+yl+ yre
  NNU_021998-RA  31 REQDRFLPIANISRIMKKVIPPNGKIAKDAKDCVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIAPLKMYLQLYRE 121
                    89****************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.7E-5028121IPR009072Histone-fold
SuperFamilySSF471136.21E-3833121IPR009072Histone-fold
PfamPF008087.9E-2936100IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006159.7E-206482No hitNo description
PROSITE patternPS0068506783IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006159.7E-2083101No hitNo description
PRINTSPR006159.7E-20102120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MAESGAPGTP ESVHSGEQGG GGAQSGGTGP REQDRFLPIA NISRIMKKVI PPNGKIAKDA  60
KDCVQECVSE FISFITSEAS DKCQREKRKT INGDDLLWAM ATLGFEDYIA PLKMYLQLYR  120
E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A5e-4831121393NF-YB
4awl_B5e-4831121494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A5e-4831121494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010279615.12e-86PREDICTED: nuclear transcription factor Y subunit B-3-like isoform X3
SwissprotP252097e-58NFYB_MAIZE; Nuclear transcription factor Y subunit B
SwissprotQ9SLG07e-58NFYB1_ARATH; Nuclear transcription factor Y subunit B-1
TrEMBLA0A1U8BHB75e-85A0A1U8BHB7_NELNU; nuclear transcription factor Y subunit B-3-like isoform X3
STRINGXP_010279613.13e-85(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.31e-58nuclear factor Y, subunit B1
Publications ? help Back to Top
  1. Li XY, et al.
    Evolutionary variation of the CCAAT-binding transcription factor NF-Y.
    Nucleic Acids Res., 1992. 20(5): p. 1087-91
    [PMID:1549471]