PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_022047-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

bHLH

Protein Properties

Length: 485aa MW: 53564.6 Da PI: 6.8417

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_022047-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16	2.1e-05	355	392	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L NNU_022047-RA 355 RKEKLGDRITALQQLVSPF-----GKTDTASVLFEAIEYIKFL 392 677888999*****998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.227	343	392	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.94E-10	353	401	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.60E-6	353	397	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.1E-7	357	396	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence Send to blast
MADQFQTGVC SGNWWNPTRN GFNGNSSPCS TALNDIGSFG WPTEMVDMKT RSTEESASVC 60 DSSIVFSDTQ KQQVADSVSG GGVLMDSTLQ IMGFGLSSPT TVDWNQALLR SSGRGEANFH 120 SMLQEELSSR HSFRQETSME SSQLQKEWSP KNFSVSGEDS SINALKQINQ VFALDQQRLN 180 SINSSSECTV TCQGLPTSFP MSSTSYGCTS TLLQGLFETD PQSQQSSFEN GSINLLPNCR 240 INSNDISPSW PKFSQLLKTS PPKQQSTNQL HFSNKGPFWN ASAAAMNEVR SSYFPSSQTQ 300 LLTPTFEEKP NCSNLTAKSS TEDVRDSASA VKKGNSEPAF KRPRIETPLP TFKVRKEKLG 360 DRITALQQLV SPFGKTDTAS VLFEAIEYIK FLHDQVSVSF KYSIYEKWSF HSTQAGFHNC 420 CLVVLSQQKK RLSVMQNSDK SKEGEAHKPD LRSRGLCLVP ISSTYPVTNE TAADFWTPTF 480 GGTYR

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence Send to blast

MADQFQTGVC SGNWWNPTRN GFNGNSSPCS TALNDIGSFG WPTEMVDMKT RSTEESASVC  60
DSSIVFSDTQ KQQVADSVSG GGVLMDSTLQ IMGFGLSSPT TVDWNQALLR SSGRGEANFH  120
SMLQEELSSR HSFRQETSME SSQLQKEWSP KNFSVSGEDS SINALKQINQ VFALDQQRLN  180
SINSSSECTV TCQGLPTSFP MSSTSYGCTS TLLQGLFETD PQSQQSSFEN GSINLLPNCR  240
INSNDISPSW PKFSQLLKTS PPKQQSTNQL HFSNKGPFWN ASAAAMNEVR SSYFPSSQTQ  300
LLTPTFEEKP NCSNLTAKSS TEDVRDSASA VKKGNSEPAF KRPRIETPLP TFKVRKEKLG  360
DRITALQQLV SPFGKTDTAS VLFEAIEYIK FLHDQVSVSF KYSIYEKWSF HSTQAGFHNC  420
CLVVLSQQKK RLSVMQNSDK SKEGEAHKPD LRSRGLCLVP ISSTYPVTNE TAADFWTPTF  480
GGTYR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010240994.1	0.0	PREDICTED: transcription factor bHLH123-like
TrEMBL	A0A1U7YTF8	0.0	A0A1U7YTF8_NELNU; transcription factor bHLH123-like
STRING	XP_010240994.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	1e-57	bHLH family protein