PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_022069-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

GRAS

Protein Properties

Length: 550aa MW: 61805.1 Da PI: 7.092

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_022069-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	411.8	6.3e-126	181	549	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 ++lL++cA+a++++ + +l+++ + +s +g+p+qRl ay++e+L ar s++++y+al+++e + s++ l+++++++e++P+lkf++++ NNU_022069-RA 181 KQLLIKCARALNEKRTDYFMRLVQHTRGVVSISGEPIQRLGAYMLEGLVARKEASGTNIYRALKCREPE---SQDLLSYMQILYEICPYLKFGYMA 273 689***************************************************************9...9******************* PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlel 191 aN aI ea+ +e+rvHiiDf i qG+QW++L+qaLa+Rp+gpp++RiTg++++ s+ + +le++g++ a + ++l++p+ef++ v +d++ NNU_022069-RA 274 ANGAIAEAFRTEDRVHIIDFHIAQGTQWLTLIQALAARPSGPPHVRITGIDDAVSKyaRGGSLESVGKKFAAISQKLKIPVEFHA-VPVFAADVTR 368 ************************************************998899999********************.688899 PP GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287 ++L+v+ gEa+aVn+ lqlh+++desv+++++rd++L+++kslsPkvv++veqe+++n+++Fl+rf+e+l++ysa+f+s++++lpr+ ++ri vE+ NNU_022069-RA 369 DMLDVRAGEAVAVNFNLQLHHTPDESVDVNNPRDALLRVLKSLSPKVVTLVEQESNTNTTPFLTRFVETLNFYSAMFESIDVTLPRDRKDRIRVEQ 464 ******************************************************************************************** PP GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 ++l+r+ivn++aceg+er+erhe l+kW++r+++aGF+p+pls+++++ ++ lr ++ + y++ e++g+++lg k r+L+s+SaW NNU_022069-RA 465 HCLARDIVNIIACEGKERVERHELLGKWKSRFMMAGFQPYPLSSYVNSVIRDFLRSYS-EHYTLVEKDGAMLLGSKARNLISASAW 549 ******************************************************.55*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	65.089	154	531	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.2E-123	181	549	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 550 aa Download sequence Send to blast
MVGSVKFNLD SSPDSPISIH SDCDTFTSLS NSLEQYSSTE NLSGNISPSR NSSLEINSSF 60 PRIIPSPVHL PDSAELYSGG SSLSKDANRD HSMKNTLQEL ENVLMCDAYE DELTTSGNKW 120 LQISTQRSKD WSWESLQRSH VIQPQPYLAS RNLRLGAGVD AEKRHRATET SYQEIVQTDV 180 KQLLIKCARA LNEKRTDYFM RLVQHTRGVV SISGEPIQRL GAYMLEGLVA RKEASGTNIY 240 RALKCREPES QDLLSYMQIL YEICPYLKFG YMAANGAIAE AFRTEDRVHI IDFHIAQGTQ 300 WLTLIQALAA RPSGPPHVRI TGIDDAVSKY ARGGSLESVG KKFAAISQKL KIPVEFHAVP 360 VFAADVTRDM LDVRAGEAVA VNFNLQLHHT PDESVDVNNP RDALLRVLKS LSPKVVTLVE 420 QESNTNTTPF LTRFVETLNF YSAMFESIDV TLPRDRKDRI RVEQHCLARD IVNIIACEGK 480 ERVERHELLG KWKSRFMMAG FQPYPLSSYV NSVIRDFLRS YSEHYTLVEK DGAMLLGSKA 540 RNLISASAWH

Sequence ? help Back to Top

Protein Sequence Length: 550 aa Download sequence Send to blast

MVGSVKFNLD SSPDSPISIH SDCDTFTSLS NSLEQYSSTE NLSGNISPSR NSSLEINSSF  60
PRIIPSPVHL PDSAELYSGG SSLSKDANRD HSMKNTLQEL ENVLMCDAYE DELTTSGNKW  120
LQISTQRSKD WSWESLQRSH VIQPQPYLAS RNLRLGAGVD AEKRHRATET SYQEIVQTDV  180
KQLLIKCARA LNEKRTDYFM RLVQHTRGVV SISGEPIQRL GAYMLEGLVA RKEASGTNIY  240
RALKCREPES QDLLSYMQIL YEICPYLKFG YMAANGAIAE AFRTEDRVHI IDFHIAQGTQ  300
WLTLIQALAA RPSGPPHVRI TGIDDAVSKY ARGGSLESVG KKFAAISQKL KIPVEFHAVP  360
VFAADVTRDM LDVRAGEAVA VNFNLQLHHT PDESVDVNNP RDALLRVLKS LSPKVVTLVE  420
QESNTNTTPF LTRFVETLNF YSAMFESIDV TLPRDRKDRI RVEQHCLARD IVNIIACEGK  480
ERVERHELLG KWKSRFMMAG FQPYPLSSYV NSVIRDFLRS YSEHYTLVEK DGAMLLGSKA  540
RNLISASAWH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	5e-60	186	549	24	377	Protein SCARECROW
5b3h_D	5e-60	186	549	24	377	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269\|PubMed:12591613}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269\|PubMed:12591613}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010241020.1	0.0	PREDICTED: chitin-inducible gibberellin-responsive protein 1-like
Refseq	XP_010241021.1	0.0	PREDICTED: chitin-inducible gibberellin-responsive protein 1-like
Swissprot	Q69VG1	0.0	CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBL	A0A1U7YQ72	0.0	A0A1U7YQ72_NELNU; chitin-inducible gibberellin-responsive protein 1-like
STRING	XP_010241020.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48150.2	1e-173	GRAS family protein

Publications ? help Back to Top
Day RB, et al. Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells. Plant Mol. Biol., 2004. 54(2): p. 261-72 [PMID:15159627]