PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_022080-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

C2H2

Protein Properties

Length: 429aa MW: 46694.4 Da PI: 9.3605

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_022080-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.6	4.6e-05	196	218	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++Cg+ F +++L+ H + H NNU_022080-RA 196 TCHKCGEQFGKWETLEAHHLSkH 218 7*****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	197	218	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	6.47E-22	220	428	No hit	No description
Gene3D	G3DSA:3.90.228.10	2.2E-8	228	423	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence Send to blast
MPTVWFVLKR SLHCKSEPSD VHDPKARSHL STFLTRKTGR SGCSRSIANL KDVIHGSKRH 60 LEKPPSCSPR SIGSSEFLNP ITHEVILSNS TCELKITGFG GLHEVAGGGL GGDGSTFVGT 120 LRPGTPGPGG HHTMHYYNPS LKSSATPPRK SPGFLSDRGG SIFGGSAIFG GGDGGGIPSN 180 PRTSHEVDSH GSSTVTCHKC GEQFGKWETL EAHHLSKHAV TELVEGDSSR KIVEIICRTS 240 WLKSENNCGR IERVLKVHNM QKTLARFEEY REMVKMKASK LPKKHPRCLA DGNELLRFYG 300 TTVACSLGMN GSSNLCMLEK CSVCRIIRHG FSTKKELKGG IGVFTTSTSG RAFESIQLYE 360 DDPSVKKALI VCRVIAGRVH RPLENFQELA GQTGFDSLAG KVGLYSNIEE LYLLNPRALL 420 PCFVVICRH

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence Send to blast

MPTVWFVLKR SLHCKSEPSD VHDPKARSHL STFLTRKTGR SGCSRSIANL KDVIHGSKRH  60
LEKPPSCSPR SIGSSEFLNP ITHEVILSNS TCELKITGFG GLHEVAGGGL GGDGSTFVGT  120
LRPGTPGPGG HHTMHYYNPS LKSSATPPRK SPGFLSDRGG SIFGGSAIFG GGDGGGIPSN  180
PRTSHEVDSH GSSTVTCHKC GEQFGKWETL EAHHLSKHAV TELVEGDSSR KIVEIICRTS  240
WLKSENNCGR IERVLKVHNM QKTLARFEEY REMVKMKASK LPKKHPRCLA DGNELLRFYG  300
TTVACSLGMN GSSNLCMLEK CSVCRIIRHG FSTKKELKGG IGVFTTSTSG RAFESIQLYE  360
DDPSVKKALI VCRVIAGRVH RPLENFQELA GQTGFDSLAG KVGLYSNIEE LYLLNPRALL  420
PCFVVICRH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010241023.1	0.0	PREDICTED: uncharacterized protein LOC104585747
TrEMBL	A0A1U7YTI3	0.0	A0A1U7YTI3_NELNU; uncharacterized protein LOC104585747
STRING	XP_010241023.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	1e-129	C2H2 family protein