PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_022094-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family B3
Protein Properties Length: 431aa    MW: 48143.7 Da    PI: 7.8191
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_022094-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3101.16.5e-32124228199
                    EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sef 90 
                    f+kv tpsdv+k++rlv+pk++ae++    +  +e++  l +ed+sg+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  + 
  NNU_022094-RA 124 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSATNEKGLLLNFEDRSGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFERGvGEsGRD 219
                    89***************************966667889*************************************************665777888 PP

                    ..EEEEE-S CS
             B3  91 elvvkvfrk 99 
                    +l++ ++r+
  NNU_022094-RA 220 RLYIDWRRR 228
                    999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-53787IPR016177DNA-binding domain
SMARTSM003803.6E-43892IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.106.3E-41119229IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.94E-30121228IPR015300DNA-binding pseudobarrel domain
CDDcd100172.86E-26122218No hitNo description
SMARTSM010195.2E-24124229IPR003340B3 DNA binding domain
PfamPF023622.4E-29124228IPR003340B3 DNA binding domain
PROSITE profilePS5086314.833124229IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MDFMQGGGYY EEEEEMVVDR GGKFPFSSAS SSSSPSSQYK GVVPRPNRRW GGQMYEKHQQ  60
EEEAVRSYDR PAPLEFHGQD AVTNFNQKLG LIDLSTINGG DASRGEADGG GNTSGGCVER  120
EHMFDKVVTP SDVGKLNRLV IPKQHAEKYF PLDSATNEKG LLLNFEDRSG KPWRFRYSYW  180
NSSQSYVMTK GWSRFVKEKK LDAGDIVSFE RGVGESGRDR LYIDWRRRPD VPDPGMLPPL  240
PFGNPLSLAR SSVVPWGRLF LQAPSAVSLA VSMPSRDHLH FQQLKNYDYY QQKQQYQHPD  300
HQSSSTWGYN NVVRSGSGSV LYLRSSSAPQ QGVVQHVQRG DEPMVFDSVP VVHGKAAAKR  360
VRLFGVNLDC PISEDPGSHA LSSPTVESLS PPHHQYLTSP PPPQLRLYNG ATMPAEFPNN  420
GKQSLSFKLD I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-661192313116B3 domain-containing transcription factor NGA1
5os9_B1e-661192313116B3 domain-containing transcription factor NGA1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010241058.10.0PREDICTED: B3 domain-containing protein Os03g0120900-like
RefseqXP_010241059.10.0PREDICTED: B3 domain-containing protein Os03g0120900-like
SwissprotQ8LMR92e-76Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA0A1U7YTL10.0A0A1U7YTL1_NELNU; B3 domain-containing protein Os03g0120900-like
STRINGXP_010241058.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.14e-73B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]